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Bio-inspired Materials Give Boost to Regenerative Medicine – Bioscience Technology

August 22nd, 2017 7:47 pm

What if one day, we could teach our bodies to self-heal like a lizards tail, and make severe injury or disease no more threatening than a paper cut?

Or heal tissues by coaxing cells to multiply, repair or replace damaged regions in loved ones whose lives have been ravaged by stroke, Alzheimers or Parkinsons disease?

Such is the vision, promise and excitement in the burgeoning field of regenerative medicine, now a major ASU initiative to boost 21st-century medical research discoveries.

ASU Biodesign Institute researcher Nick Stephanopoulos is one of several rising stars in regenerative medicine. In 2015, Stephanopoulos, along with Alex Green and Jeremy Mills, were recruited to the Biodesign Institutes Center for Molecular Design and Biomimetics (CMDB), directed by Hao Yan, a world-recognized leader in nanotechnology.

One of the things that that attracted me most to the ASU and the Biodesign CMDB was Haos vision to build a group of researchers that use biological molecules and design principles to make new materials that can mimic, and one day surpass, the most complex functions of biology, Stephanopoulos said.

I have always been fascinated by using biological building blocks like proteins, peptides and DNA to construct self-assembled structures, devices and materials, and the interdisciplinary and highly collaborative team in the CMDB is the ideal place to put this vision into practice.

Yans research center uses DNA and other basic building blocks to build their nanotechnology structures only at a scale 1,000 times smaller than the width of a human hair.

Theyve already used nanotechnology to build containers to specially deliver drugs to tissues, build robots to navigate a maze or nanowires for electronics.

To build a manufacturing industry at that tiny scale, their bricks and mortar use a colorful assortment of molecular Legos. Just combine the ingredients, and these building blocks can self-assemble in a seemingly infinite number of ways only limited by the laws of chemistry and physics and the creative imaginations of these budding nano-architects.

Learning from nature

The goal of the Center for Molecular Design and Biomimetics is to usenatures design rulesas an inspiration in advancing biomedical, energy and electronics innovation throughself-assembling moleculesto create intelligent materials for better component control and for synthesis intohigher-order systems, said Yan, who also holds the Milton Glick Chair in Chemistry and Biochemistry.

Prior to joining ASU, Stephanopoulos trained with experts in biological nanomaterials, obtaining his doctorate with the University of California Berkeleys Matthew Francis, and completed postdoctoral studies with Samuel Stupp at Northwestern University. At Northwestern, he was part of a team that developed a new category of quilt-like, self-assembling peptide and peptide-DNA biomaterials for regenerative medicine, with an emphasis in neural tissue engineering.

Weve learned from nature many of the rules behind materials that can self-assemble. Some of the most elegant complex and adaptable examples of self-assembly are found in biological systems, Stephanopoulos said.

Because they are built from the ground-up using molecules found in nature, these materials are also biocompatible and biodegradable, opening up brand-new vistas for regenerative medicine.

Stephanopoulos tool kit includes using proteins, peptides, lipids and nucleic acids like DNA that have a rich biological lexicon of self-assembly.

DNA possesses great potential for the construction of self-assembled biomaterials due to its highly programmable nature; any two strands of DNA can be coaxed to assemble to make nanoscale constructs and devices with exquisite precision and complexity, Stephanopoulos said.

Proof all in the design

During his time at Northwestern, Stephanopoulos worked on a number of projects and developed proof-of-concept technologies for spinal cord injury, bone regeneration and nanomaterials to guide stem cell differentiation.

Now, more recently, in a new studyin Nature Communications, Stephanopoulos and his colleague Ronit Freeman in the Stupp laboratory successfully demonstrated the ability to dynamically control the environment around stem cells, to guide their behavior in new and powerful ways.

In the new technology, materials are first chemically decorated with different strands of DNA, each with a unique code for a different signal to cells.

To activate signals within the cells, soluble molecules containing complementary DNA strands are coupled to short protein fragments, called peptides, and added to the material to create DNA double helices displaying the signal.

By adding a few drops of the DNA-peptide mixture, the material effectively gives a green light to stem cells to reproduce and generate more cells. In order to dynamically tune the signal presentation, the surface is exposed to a soluble single-stranded DNA molecule designed to grab the signal-containing strand of the duplex and form a new DNA double helix, displacing the old signal from the surface.

This new duplex can then be washed away, turning the signal off. To turn the signal back on, all that is needed is to now introduce a new copy of single-stranded DNA bearing a signal that will reattach to the materials surface.

One of the findings of this work is the possibility of using the synthetic material to signal neural stem cells to proliferate, then at a specific time selected by the scientist, trigger their differentiation into neurons for a while, before returning the stem cells to a proliferative state on demand.

One potential use of the new technology to manipulate cells could help cure a patient with neurodegenerative conditions like Parkinsons disease.

The patients own skin cells could be converted to stem cells using existing techniques. The new technology could help expand the newly converted stem cells back in the lab and then direct their growth into specific dopamine-producing neurons before transplantation back to the patient.

People would love to have cell therapies that utilize stem cells derived from their own bodies to regenerate tissue, Stupp said. In principle, this will eventually be possible, but one needs procedures that are effective at expanding and differentiating cells in order to do so. Our technology does that.

In the future, it might be possible to perform this process entirely within the body. The stem cells would be implanted in the clinic, encapsulated in the type of material described in the new work, and injected into a particular spot. Then the soluble peptide-DNA molecules would be given to the patient to bind to the material and manipulate the proliferation and differentiation of transplanted cells.

Scaling the barriers

One of the future challenges in this area will be to develop materials that can respond better to external stimuli and reconfigure their physical or chemical properties accordingly.

Biological systems are complex, and treating injury or disease will in many cases necessitate a material that can mimic the complex spatiotemporal dynamics of the tissues they are used to treat, Stephanopoulos said.

It is likely that hybrid systems that combine multiple chemical elements will be necessary; some components may provide structure, others biological signaling and yet others a switchable element to imbue dynamic ability to the material.

A second challenge, and opportunity, for regenerative medicine lies in creating nanostructures that can organize material across multiple length scales. Biological systems themselves are hierarchically organized: from molecules to cells to tissues, and up to entire organisms.

Consider that for all of us, life starts simple, with just a single cell. By the time we reach adulthood, every adult human body is its own universe of cells, with recent estimates of 37 trillion or so. The human brain alone has 100 billion cells or about the same number of cells as stars in the Milky Way galaxy.

But over the course of a life, or by disease, whole constellations of cells are lost due to the ravages of time or the genetic blueprints going awry.

Collaborative DNA

To overcome these obstacles, much more research funding and recruitment of additional talent to ASU will be needed to build the necessary regenerative medicine workforce.

Last year, Stephanopoulos research received a boost with funding from the U.S. Air Forces Young Investigator Research Program (YIP).

The Air Force Office of Scientific ResearchYIP award will facilitate Nicks research agenda in this direction, and is a significant recognition of his creativity and track record at the early stage of his careers, Yan said.

Theyll need this and more to meet the ultimate challenge in the development of self-assembled biomaterials and translation to clinical applications.

Buoyed by the funding, during the next research steps, Stephanopoulos wants to further expand horizons with collaborations from other ASU colleagues to take his research teams efforts one step closer to the clinic.

ASU and the Biodesign Institute also offer world-class researchers in engineering, physics and biology for collaborations, not to mention close ties with the Mayo Clinic or a number of Phoenix-area institutes so we can translate our materials to medically relevant applications, Stephanopoulos said.

There is growing recognition that regenerative medicine in the Valley could be a win-win for the area, in delivering new cures to patients and building, person by person, a brand-new medicinal manufacturing industry.

Stephanopoulos recent research was carried out at Stupps Northwesterns Simpson Querrey Institute for BioNanotechnology. The National Institute of Dental and Craniofacial Research of the National Institutes of Health (grant 5R01DE015920) provided funding for biological experiments, and the U.S. Department of Energy, Office of Science, Basic Energy Sciences provided funding for the development of the new materials (grants DE-FG01-00ER45810 and DE-SC0000989 supporting an Energy Frontiers Research Center on Bio-Inspired Energy Science (CBES)).

The paper is titled Instructing cells with programmable peptide DNA hybrids. Samuel I. Stupp is the senior author of the paper, and post-doctoral fellows Ronit Freeman and Nicholas Stephanopoulos are primary authors.

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Regenerative Medicine Market to Reach $5.5 Billion by 2025 … – PR Newswire (press release)

August 22nd, 2017 7:47 pm

The global regenerative medicine market size is expected to reach USD 5.59 billion by 2025, according to this new report. Increased prevalence of neurodegenerative, orthopedic, and other aging-related disorders in geriatric population coupled with rising global geriatric population is anticipated to drive market growth.

Developments in biotechnology have enabled gaining in-depth knowledge pertaining to cell division and differentiation as well as the metabolism mechanism of various cells. This enriched knowledge, coupled with emergence of novel streams of biotechnology such as gene therapy and nanotechnology, further prospered use of cell-based technology in therapeutic treatment.

Identification of ability of stem cells to develop into various different cell lines further propelled the advancements in regenerative medicine. Frequent media exposure due to regulatory as well as ethical controversies around embryonic stem cells has increased awareness among the masses. This encouraged researchers to explore and develop other potential fields for similar applications, such as induced pluripotent stem cells (iPSC).

Furthermore, the emergence of gene therapy techniques with potential to rectify and restore effects of gene mutations in cells is under development. Conditions caused due to Single Nucleotide Polymorphism (SNP) as well as mutations that induce degenerative characteristics are primarily targeted.

Companies Mentioned

Key Topics Covered:

1 Research Methodology

2. Executive Summary

3. Regenerative Medicnie Market Variables, Trends & Scope

4. Regenerative Medicine Market: Product Type Estimates & Trend Analysis

5. Regenerative Medicine Market: Therapeutic Category Estimates & Trend Analysis

6. Regenerative Medicine Market: Regional Estimates & Trend Analysis, by Product And Therapeutic Category

7. Competitive Landscape

For more information about this report visit https://www.researchandmarkets.com/research/948x9s/regenerative

Media Contact:

Laura Wood, Senior Manager press@researchandmarkets.com

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SOURCE Research and Markets

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Cellerant Therapeutics, Inc. Awarded $6.86 Million Grant From California Institute for Regenerative Medicine to … – Business Wire (press release)

August 22nd, 2017 7:47 pm

SAN CARLOS, Calif.--(BUSINESS WIRE)--Cellerant Therapeutics, Inc., a clinical-stage company developing innovative immunotherapies for hematologic malignancies and other blood-related disorders, today announced it has been awarded a grant from the California Institute for Regenerative Medicine (CIRM) for up to $6.86 million to support preclinical development and the filing of an Investigational New Drug application (IND) for CLT030-ADC, Cellerants antibody-drug conjugate (ADC) product for the treatment for acute myeloid leukemia (AML). AML is an aggressive cancer with high relapse rates and low overall survival, which are thought to be due to the persistence of leukemic stem cells that are relatively resistant to current chemotherapy regimens. CLT030-ADC targets C-type-like lectin 1 (CLL1), a cell surface antigen highly expressed on leukemic stem cells but not on normal hematopoietic stem and progenitor cells.

CIRM is an agency of the State of California whose mission is to accelerate stem cell treatments to patients with unmet medical needs. CIRM grants are awarded through a competitive process which includes rigorous review and evaluation by independent scientific and medical experts.

"We are honored to receive this award from CIRM, which will help us advance the development of CLT030-ADC, said Ram Mandalam, Ph.D., President and Chief Executive Officer of Cellerant. Based on target characteristics and preclinical results, CLT030-ADC has the potential to increase survival and become a first-in-class treatment for AML patients. We are excited to be working with CIRM to develop this novel therapeutic for an unmet medical need.

Our mission here at CIRM is to support novel stem cell-based therapeutics, including those that target cancer stem cells, added Maria Millan, M.D., interim President and CEO of CIRM. Cancer stem cells are believed to play a key role in tumor formation and growth, so attacking them has the potential to improve patient outcomes in deadly diseases such as AML.

CLT030-ADC consists of an antibody targeting CLL1 linked to a DNA-damaging cytotoxic payload. CLL1 is an antigen expressed specifically on AML cancer stem cells and not on normal hematopoietic stem cells. The Company and others have shown that CLL1 is expressed in approximately 90% of all AML patient types, including all French American British classifications, all cytogenetic risk categories, and in patients independent of FLT-3 status. In preclinical AML models, CLT030-ADC demonstrated complete target-dependent tumor regression. Importantly, CLT030-ADC should have minimal effect on the formation of

normal blood cell types because CLL1 is not expressed on normal hematopoietic stem cells and minimally on progenitor cells. This would potentially be an important safety advantage compared to other targeted therapies for AML where the target antigen is expressed on normal stem and progenitor cells, such as CD33.

About Cellerant Therapeutics

Cellerant Therapeutics is a clinical-stage company developing innovative cell- and antibody-based immunotherapies for hematologic malignancies and other blood-related disorders. Cellerants CLT-008 (human myeloid progenitor cells) is a universal cell therapy for the treatment of neutropenia. Chemotherapy-induced neutropenia is a severe side effect of many chemotherapy regimens, particularly for AML and other hematologic malignancies. CLT-008 is currently in a randomized, controlled Phase 2 clinical trial in patients with AML. Cellerants is developing two antibody drug-conjugate (ADC) product candidates: CLT030-ADC, intended to treat AML by selectively targeting and killing leukemic stem and blast cells, and CLT012-ADC, which could be a potential treatment for AML and a number of solid tumors. For more information, visit: http://www.cellerant.com

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Genetics, Not Laziness, Might Be Why You Hate Exercising – Medical Daily

August 22nd, 2017 7:47 pm

For some, the hardest part of hitting the gym is lacing up their shoes. But for others, its the actual exercise that makes working out so excruciating. The labored breathing, sore muscles, and sweat dripping into your eyes can be a high or just one step above torture depending on which type of person you are. A new study aimed to determine what accounts for these differences, and it turns out your genetics might be to blame for how much you dread going for a run.

The British Psychological Societys Research Digest reports on a study at the Vrije Universiteit Amsterdam in the Netherlands, which enlisted 115 pairs of identical twins, 111 pairs of non-identical twins, 35 siblings related to the twins and 6 sibling pairs not from families with twins. Everyone rode an exercise bike for 20 minutes and completed a 20-minute run, both at a comfortable pace. Researchers monitored breathing to ensure the workouts were low intensity, and a warm up and cool down accompanied the routines. Subjects also completed a second short ride on the exercise bike that was more vigorous.

The siblings completed assessments while exercising, answering how they felt while working out, how much effort they put in, and whether they were energetic, lively, jittery or tense. Additionally, participants were interviewed about how often they exercised and to what intensity. Using the responses, researchers determined the participants psychological state during physical activity.

Then, scientists looked at the data to determine whether identical twins, who also have identical genes, had similar responses to exercising compared to fraternal twins and non-twin siblings. This allowed them to theorizehow much genetics actually played a role in someone's mental state during physical fitness. They concluded that genetics could account for up to 37 percent of the differences in the way people experienced exercise. Unsurprisingly, people who enjoyed fitness were prone to doing it more. However, its important to note that the study doesnt show a cause and effect relationship.

While this new research indicates that somemay not be born to love fitness, theres no denying that we should still do it. Aside from helping maintain weight, working out can lift your mood, reduce stress and anxiety, strengthen bones and and reduce risk of certain diseases.

Thankfully, it is possible to actually enjoy physical activity. Health reports that the most important thing is to take up an activity you actually like (and yes, there is bound to be something). "Too often I see people who sign up to do something like running, even though they know they hate running," Shavise Glascoe, exercise physiologist at the Johns Hopkins Weight Management Center, explained to the magazine. Even non-vigorous activities like walking your dog or dancing in your room count as exercise.

Finding a workout buddy is an easy way to instantly make jogging, walking or lifting weights more interesting. A study from 2013 found that people who worked out with a spouse, friend or family member reported more enjoyment than doing it alone. If the activity took place around nature, people reported even more enjoyment and better moods. So, stop reading this, grab a buddy and hit your nearest walking trail.

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Using Genetics to Uncover Human History – JD Supra (press release)

August 22nd, 2017 7:47 pm

Human history is often something modern man only sees as through a glass, darkly. This is particularly the case when that history did not occur in the Mediterranean, the Nile Valley, India, or China, or when there is no written record on which scholars can rely. Exacerbating the disrupting effects of time on history can be when that history occurs in a region where extensive migration has disrupted whatever temporarily stable civilization happened to have taken root at that place at any particular time.

But humans leave traces of themselves in their history and a variety of such traces have been the source of reconstructions outside conventional sources. Luigi Cavalli-Sforza began the study of human population genetics as a way to understand this history in 1971 in The Genetics of Human Populations, and later extended these studies to include language and how it influences gene flow between human populations. More recent efforts to use genetics to reconstruct history include Deep Ancestry: The Landmark DNA Quest to Decipher Our Distant Past by Spencer Wells (National Geographic: 2006), and The Seven Daughters of Eve: The Science that Reveals our Genetic Ancestry by Brian Sykes (Carrol & Graf: 2002). And even more recently, genetic studies have illuminated the "fine structure" of human populations in England (see "Fine-structure Genetic Mapping of Human Population in Britain").

Two recent reports illustrate how genetics can inform history: the first, in the American Journal of Human Genetics entitled "Continuity and Admixture in the Last Five Millennia of Levantine History from Ancient Canaanite and Present-Day Lebanese Genome Sequences"; and a second in the Proceedings of the National Academy of Sciences USA, entitled "Genomic landscape of human diversity across Madagascar." In the first study, authors* from The Wellcome Trust Sanger Institute, University of Cambridge, University of Zurich, University of Otago, Bournemouth University, Lebanese American University, and Harvard University found evidence of genetic admixture over 5,000 years of a Canaanite population that has persisted in Lebanese populations into the modern era. This population is interesting for historians in view of the central location of the ancestral home of the Canaanites, the Levant, in the Fertile Crescent that ran from Egypt through Mesopotamia. The Canaanites also inhabited the Levant during the Bronze Age and provide a critical link between the Neolithic transition from hunter gatherer societies to agriculture. This group (known to the ancient Greeks as the Phoenicians) is also a link to the great early societies recognized through their historical writings and civilizations (including the Egyptians, Assyrians, Babylonians, Persians, Greeks, and Romans); if the Canaanites had any such texts or other writings they have not survived. In addition, the type of genetic analyses that have been done for European populations has not been done for descendants of inhabitants of the Levant from this historical period. This paper uses genetic comparisons between 99 modern day residents of Lebanon (specifically, from Sidon and the Lebanese interior) and ancient DNA (aDNA) from ~3,700 year old genomes from petrous bone of individuals interred in gravesites in Sidon. For aDNA, these analyses yielded 0.4-2.3-fold genomic DNA coverage and 53-264-fold mitochondrial DNA coverage, and also compared Y chromosome sequences with present-day Lebanese, two Canaanite males and samples from the 1000 Genomes Project. Over one million single nucleotide polymorphisms (SNPs) were used for comparison.

These results indicated that the Canaanite ancestry was an admixture of local Neolithic populations and migrants from Chalcolithic (Copper Age) Iran. The authors estimate from these linkage disequilibrium studies that this admixture occurred between 6,600 and 3,550 years ago, a date that is consistent with recorded mass migrations in the region during that time. Perhaps surprisingly, their results also show that the majority of the present-day Lebanese population has inherited most of their genomic DNA from these Canaanite ancestors. These researchers also found traces of Eurasian ancestry consistent with conquests by outside populations during the period from 3,750-2,170 years ago, as well as the expansion of Phoenician maritime trade network that extended during historical time to the Iberian Peninsula.

The second paper arose from genetic studies of an Asian/African admixture population on Mozambique. This group** from the University of Toulouse, INSERM, the University of Bordeaux, University of Indonesia, the Max Plank Institute for Evolutionary Anthropology, Institut genomique, Centre Nacional de Genotypage, University of Melbourne, and the Universite de la Rochelle, showed geographic stratification between ancestral African (mostly Bantu) and Asian (Austronesean) ancestors. Cultural, historical, linguistic, ethnographic, archeological, and genetic studies supports the conclusion that Madagascar residents have traits from both populations but the effects of settlement history are termed "contentious" by these authors. Various competing putative "founder" populations (including Arabic, Indian, Papuan, and/or Jewish populations as well as first settlers found only in legend, under names like "Vazimba," "Kimosy," and "Gola") have been posited as initial settlers. These researchers report an attempt to illuminate the ancestry of the Malagasy by a study of human genetics.

These results showed common Bantu and Austronesian descent for the population with what the authors termed "limited" paternal contributions from Europe and Middle Eastern populations. The admixture of African and Austronesian populations occurred "recently" (i.e., over the past millennium) but was gender-biased and heterogeneous, which reflected for these researchers independent colonization by the two groups. The results also indicated that detectable genetic structure can be imposed on human populations over a relatively brief time (~ a few centuries).

Using a "grid-based approach" the researchers performed a high-resolution genetic diversity study that included maternal and paternal lineages as well as genome-wide data from 257 villages and over 2,700 Malagasy individuals. Maternal inheritance patterns were interrogated using mitochondrial DNA and patterns of paternity assayed using Y chromosomal sequences. Non-gender specific relationships were assessed through 2.5 million SNPs. Mitochondrial DNA analyses showed maternal inheritance from either African or East Asian origins (with one unique Madagascar variant termed M23) in roughly equal amounts, with no evidence of maternal gene flow from Europe or the Middle East. The M23 variant shows evidence of recent (within 900-1500 years) origin. Y chromosomal sequences, in contrast are much more prevalent from African origins (70.7% Africa:20.7% East Asia); the authors hypothesize that the remainder may reflect Muslim influences, with evidence of but little European ancestry.

Admixture assessments support Southeast Asian (Indonesian) and East African source populations for the Malagasy admixture. These results provide the frequency of the African component to be ~59%, the Asian component frequency to be ~37%, and the Western European component to have a frequency of about 4% (albeit with considerable variation, e.g., African ancestry can range from ~26% to almost 93%). Similar results were obtained when the frequency of chromosomal fragments shared with other populations were compared to the Malagasy population (finding the closest link to Asian populations from south Borneo, and excluding Indian, Somali, and Ethiopian populations, although the analysis was sensitive in one individual to detect French Basque ancestry). The split with ancestral Asian populations either occurred ~2,500 years ago or by slower divergence between ~2,000-3,000 years ago, while divergence with Bantu populations occurred more recently (~1,500 years ago).

There were also significant differences in geographic distribution between descendants of these ancestral populations. Maternal African lineages were found predominantly in north Madagascar, with material Asian lineages found in central and southern Madagascar (from mtDNA analyses). Paternal lineages were generally much lower overall for Asian descendants (~30% in central Madagascar) based on Y chromosome analyses. Genome-wide analyses showed "highlanders" had predominantly Asian ancestry (~65%) while coastal inhabitants had predominantly (~65%) African ancestry; these results depended greatly on the method of performing the analyses which affected the granularity of the geographic correlates. Finally, assessing admixture patterns indicated that the genetic results are consistent with single intermixing event (500-900 years ago) for all but one geographic area, which may have seen a first event 28 generations ago and a second one only 4 generations ago. These researchers also found evidence of at least one population bottleneck, where the number of individuals dropped to a few hundred people about 1,000-800 years ago.

These results are represented pictorially in the paper:

In view of the current political climate, the eloquent opening of the paper deserves attention:

Ancient long-distance voyaging between continents stimulates the imagination, raises questions about the circumstances surrounding such voyages, and reminds us that globalization is not a recent phenomenon. Moreover, populations which thereby come into contact can exchange genes, goods, ideas and technologies.

* Marc Haber, Claude Doumet-Serhal, Christiana Scheib, Yali Xue, Petr Danecek, Massimo Mezzavilla, Sonia Youhanna, Rui Martiniano, Javier Prado-Martinez, Micha Szpak, Elizabeth Matisoo-Smith, Holger Schutkowski, Richard Mikulski, Pierre Zalloua, Toomas Kivisild, Chris Tyler-Smith

** Denis Pierrona, Margit Heiskea, Harilanto Razafindrazakaa, Ignace Rakotob, Nelly Rabetokotanyb, Bodo Ravololomangab, Lucien M.-A. Rakotozafyb, Mireille Mialy Rakotomalalab, Michel Razafiarivonyb, Bako Rasoarifetrab, Miakabola Andriamampianina Raharijesyb, Lolona Razafindralambob, Ramilisoninab, Fulgence Fanonyb, Sendra Lejamblec, Olivier Thomasc, Ahmed Mohamed Abdallahc, Christophe Rocherc,, Amal Arachichec, Laure Tonasoa, Veronica Pereda-lotha, Stphanie Schiavinatoa, Nicolas Brucatoa, Francois-Xavier Ricauta, Pradiptajati Kusumaa,d,e, Herawati Sudoyod,e, Shengyu Nif, Anne Bolandg, Jean-Francois Deleuzeg, Philippe Beaujardh, Philippe Grangei, Sander Adelaarj, Mark Stonekingf, Jean-Aim Rakotoarisoab, Chantal Radimilahy, and Thierry Letelliera

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Hendrix Genetics is an economic ‘win-win’ for GI – Grand Island Independent

August 22nd, 2017 7:47 pm

The opening of Hendrix Genetics in Grand Island on Aug. 15 is an excellent example of the power of markets supplemented by appropriate government policy.

Feeding a growing world population now estimated to be 7.5 billion provides both a challenge and an opportunity as food producers endeavor to meet the growing demand for food. For Hendrix Genetics this demand represents opportunity as it is a world leader in turkey, layer and trout breeding as well as a major player in swine, salmon and guinea fowl production.

The numbers connected with Hendrix Genetics are impressive. They currently have 25 percent of the United States egg hatchery market and the new hatchery in Grand Island will serve 10 percent of the U.S. market. With good science and management, poultry production is an excellent way to provide quality food for both domestic and world markets.

Hendrix Genetics was willing and able to create the Grand Island plant because essential markets were available to meet their needs. After a nationwide search they determined that Grand Island was an excellent location. It provided needed isolation that was essential for the required biosecurity. In our area they found infrastructure for transportation needs, access to willing, affordable and capable labor and area producers to build and manage outlying barns as well as to provide feed.

For each component in the production process, prices, profits and wages had to be sufficient to bring together all the resources necessary to open and operate the plant.

Government policies had to align with needs of Hendrix Genetics and our community gave them an excellent invitation to grow our economy. The work of the Grand Island Area Economic Development Corporation was very important and we would add necessary and effective. Government and private enterprise had an effective partnership.

Also to be noted is that Hendrix Genetics is based in Holland and joins other industries in our community that are based in other countries such as New Holland-Italy and JBS-Brazil. Global interdependence is a reality and a plus for all those ready and willing to participate in the global economy.

America first may be effective political rhetoric in some parts of our country, but it is not good long term economic policy. Free trade and open borders will serve us better, particularly the food producers in the Midwest who are willing and able to feed the growing world population and rely on world markets.

This confluence of markets has added an $18 million investment to the city of Grand Island, more than 40 permanent jobs and an economic infusion estimated at $40 million.

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Hendrix Genetics is an economic 'win-win' for GI - Grand Island Independent

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How white supremacists respond when their DNA says they’re not … – PBS NewsHour

August 22nd, 2017 7:47 pm

A white supremacist wears a shirt with the slogan European Brotherhood at a rally in Charlottesville, Virginia, U.S., August 12, 2017. Photo by Joshua Roberts/Reuters

Whether youre a white supremacist, a white nationalist or a member of the alt-right, much of your ideology centers around a simple principle: being white. The creation of a white ethnostate, populated and controlled by pure descendants of white Europeans, ranks high on your priority list.

Yet, when confronted with genetic evidence suggesting someone isnt pure blood, as white supremacists put it, they do not cast the person out of online communities. They bargain.

A new study from UCLA found when genetic ancestry tests like 23andMe spot mixed ancestry among white supremacists, most respond in three ways to discount the results and keep members with impure genealogy in their clan. Their reactions range from challenging the basic math behind the tests to accusing Jewish conspirators of sabotage.

Some argued their family history was all the proof they needed. Or they looked in the mirror and clung to the notion that race and ethnicity are directly visible, which is false.

But the real takeaway centers on a new, nuanced pattern within white supremacist groups to redefine and solidify their ranks through genetic ancestry testing, said Aaron Panofsky, a UCLA sociologist who co-led the study presented Monday at the American Sociological Associations 112th annual meeting in Montreal.

Once they start to see that a lot of members of their community are not going to fit the all-white criteria, they start to say, Well, do we have to think about what percentage [of white European genealogy] could define membership? said Aaron Panofsky, a UCLA sociologist who co-led the study presented Monday at the American Sociological Associations 112th annual meeting in Montreal.

And this co-opting of science raises an important reminder: The best way to counter white supremacists may not be to fight their alternative facts with logical ones, according to people who rehabilitate far-right extremists.

To catalog white supremacists reactions to genetic ancestry results, this study logged onto the website Stormfront. Launched in 1995, Stormfront was an original forum of white supremacy views on the internet. The website resembles a Reddit-style social network, filled with chat forums and users posting under anonymous nicknames. By housing nearly one million archived threads and over twelve million posts by 325,000 or more members, Stormfront serves as a living history of the white nationalist movement.

Over the course of two years, Panofsky and fellow UCLA sociologist Joan Donovan combed through this online community and found 153 posts where users volunteered the results of genetic ancestry tests. They then read through the subsequent discussion threads 2,341 posts wherein the community faced their collective identities.

No surprise, but white supremacists celebrate the test results that suggest full European ancestry. One example:

67% British isles18% Balkan15% Scandinavian100% white! HURRAY!

On the flip side, Panofsky and Donovan found that bad news was rarely met with expulsion from the group.

So sometimes, someone says, Yeah, this makes you not white. Go kill yourself,' Panofsky said. Much more of the responses are what we call repair responses where theyre saying, OK, this is bad news. Lets think about how you should interpret this news to make it to make it right.'

These repair responses fell into two categories.

Reject! One coping mechanism involved the outright rejection of genetic tests validity. Some argued their family history was all the proof they needed. Or they looked in the mirror and clung to the notion that race and ethnicity are directly visible, which is false, University of Chicago population geneticist John Novembre told NewsHour.

Genetically, the idea of white European as a single homogenous group does not hold up.

Though the genetics of whiteness are not completely understood, the gene variants known to influence skin color are more diluted across the globe than any random spot in the human genome. That is to say, humans appear, based on our skin pigmentation, to be much more different from each other than we actually are on a genomic level, Novembre said.

Others accused the ancestry companies of being run and manipulated by Jews, in an attempt to thwart white nationalism, but even other Stormfront users pointed out the inaccuracy of this idea.

Reinterpret:The biggest proportion of responses 1,260 posts tried to rationalize the result by offering an educational or scientific explanation for the genetic ancestry results. Many in the online community played a numbers game. If a genetic ancestry test stated someone was 95 percent white European, they would merely count the remaining 5 percent as a statistical error.

Many adapted this line of thinking to make exceptions for those with mixed ancestry. Nearly 500 posts made appeals by misapplying theories of genetics or by saying whiteness is a culture, not just biology an apparent contradiction to the mission of forming a pure ethnostate. This trend led some white supremacists to debate the boundaries of their ethnostate, Panofsky said.

They start to think about the genetic signs and markers of white nationalism that might be useful for our community, Panofsky said. [They say] maybe there are going to be lots of different white nations, each with slightly different rules for nationalism? Or an overlapping set of nations, that are genetically defined in their own ways?

But these arguments are moot, because these genetic ancestry boundaries are inherently built on shaky ground.

If it seems white supremacists are making arbitrary decisions about their ancestry tests, its hard to blame them. Direct-to-consumer ancestry testing is a slippery, secretive industry, built largely upon arbitrary scientific definitions.

Its black box because its corporate, said Jonathan Marks, biological anthropologist at the University of North Carolina at Charlotte. The way these answers are generated depends strongly on the sampling, the laboratory work that you do and the algorithm that you use to analyze the information. All of this stuff is intellectual property. We cant really evaluate it.

White nationalists carry torches on the grounds of the University of Virginia, on the eve of a planned Unite The Right rally in Charlottesville, Virginia, U.S. August 11, 2017. Picture taken August 11, 2017. Photo by Alejandro Alvarez/News2Share via REUTERS

Genetic ancestry companies assess a persons geographic heritage by analyzing DNA markers in their autosomal DNA (for individual variation), mitochondrial DNA (for maternal history) or their Y chromosome (for paternal history). The latter two sources of DNA remain unchanged from parent to child to grandchild, aside from a relatively small number of mutations that occur naturally during life. These mutations can serve as branch points in the trees of human ancestry, Panofsky and Donovan wrote, and as DNA markers specific to different regions around the world.

When genetic anthropologists examine the full scope of humans, they find that historical patterns in DNA markers make the case that everyone in the world came from a common ancestor who was born in East Africa within the last 100,000 to 200,000 years. Plus, groups intermingled so much over the course of history that genetic diversity is a continuum both within American and Europe, through to Asia and Africa, Novembre of the University of Chicago said.

WATCH: Years after transatlantic slavery, DNA tests give clarity

Genetically, the idea of white European as a single homogenous group does not hold up. The classic geographic boundaries of the Mediterranean, Caucasus, and Urals that have shaped human movement and contact are all permeable barriers, said Novembre. Most of the genetic variants you or I carry, we share with other people all across the globeIf you are in some ethnic group, there are not single genetic variants that you definitely have and everyone outside the group does not.

Commercial ancestry companies know these truths, but bend them to draw arbitrary conclusions about peoples ancestry, researchers say. They compare DNA from a customer to the genomes of people or reference groups whose ancestries they claim to already know.

23andMe, for instance, uses reference dataset that include genomes from 10,418 people who were carefully chosen to reflect populations that existed before transcontinental travel and migration were common (at least 500 years ago). To build these geographic groups, they select individuals who say all four of their grandparents were born in the same country, and then remove outliers whose DNA markers do not match well within the group.

These choices willfully bias the genetic definitions for both geography and time. They claim that a relatively small group of modern people can reveal the past makeup of Europe, Africa and Asia and the ancestral histories for millions of customers. But their reference groups skew toward the present and overpromise on the details of where people came from.

While 23andMe denounces the use of their services to justify hateful ideologies, they do not actively ban known white supremacists from their DNA testing.

A study by 23andMe reported that with their definition of European ancestry, there is an average of 98.6 percent European ancestry among self-reported European-Americans. But given all Ive said, we should digest this with caution, Novembre said. An individual with 100 percent European ancestry tests is simply someone who looks very much like the European reference samples being used.

Though ancestry companies cite research that claims genetic tests can pinpoint someone within 100 miles of their European ancestral home, thats not always the case. Marks offered the recent example of three blond triplets who took an ancestry test for the TV show The Doctors. The test said the triplets were 99 percent European. But one sister had more English and Irish ancestry, while another had more French and German. Did we mention they are identical triplets?

That shows you just how much slop there is in these kinds of of ancestry estimates, Marks said.

Marks described commercial ancestry testing as recreational science because its proprietary nature lacks public, academic oversight, but uses scientific practices to validate stereotypical notions of race and ethnicity.

While 23andMe denounces the use of their services to justify hateful ideologies, they do not actively ban known white supremacists from their DNA testing, BuzzFeed reported.

But white supremacists arent the only ones to buy into these wayward notions when genetic ancestry tests support their self-prescribed identities or reject the science when things dont pan out as expected. African-Americans do it too, as Columbia University sociologist Alondra Nelson found in 2008.

Consumers have what I call genealogical aspiration, Nelson told NewsHour. They often make choices among dozens of companies based on the kind of information theyre seeking. If youre interested in finding whether or not youre a member of the small group that has, for example, some trace of Neanderthal DNA, then youre going to go to a company that focuses on that.

She said Panofsky and Donovans study shows that white nationalists will engage in a process of psychic and symbolic negotiation when genetic ancestry results fail to satisfy their impossible idea for racial purity.

But Panofsky, who doesnt support or sympathize with white nationalists, believes these negotiations are not a reason to dismiss white nationalists as ignorant and stupid.

I think that is actually a dangerous view, Panofsky said. Our study reveals that these white nationalists are often engaging with genetic information in extraordinarily sophisticated ways.

Many white supremacists are dealing with toxic shame, a perpetual subconscious belief system where their sense of identity is negative.

White supremacists are trying to deal with the issue of identity as an intellectual problem, said Tony McAleer, the co-founder and board chair of Life After Hate, a counseling organization that rehabs white supremacists. But he said the rehab of white nationalist views doesnt start with challenging their mental gymnastics with data.

We need to deal with the emotional drivers first, McAleer said. University of Maryland did a study of violent extremists and what they found was the number one correlated factor with someone joining a violent extremist group was childhood trauma.

But McAleer continued that the emotional trauma fueling white supremacy extends past physical and sexual abuse. Many white supremacists are dealing with toxic shame, a perpetual subconscious belief system where their sense of identity is negative.

The person feels at a subconscious level theyre not good enough, McAleer said. One way to react to that is to perpetually spend all of your efforts to prove to the world that you are a winner.

So, Life After Hates antidote to this shame is compassion and empathy, he said. Rather than toss statistics about how Muslims arent flooding the country and do not lead to spikes in crime, they will take a white supremacist to an Islamic center and have them sit down and spend time there.

A personal connection is a much more powerful way to change the dynamics within a person, than it is to re-educate the dataset thats in their head, McAleer said.

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Does genetics make me what I am? – Sunbury Daily Item

August 22nd, 2017 7:47 pm

Two timely issues call into question our use of genetics, both in science and popular usage: CRISPR technology used in the pre-natal state to genetically edit-out/repair potentially fatal genes, and the Google controversy.

CRISPR Clustered Regularly Interspersed Short Palindromic Repeats technology, discovered by scientists at UC Berkeley and modified by those at MIT, will almost certainly result in a Nobel Prize. Berkeley scientists discovered that these repeats were used by bacteria to protect themselves against viral infections. Between the repeats, they found pieces of the viral DNA that had previously attacked the bacterium. If, and when, the same virus again attacked, the intruder viral DNA would be compared to the DNA stored between the repeats. If it is recognized as a repeat offender, the bacterium sends in proteins to destroy the viral DNA. They additionally noted that in non-virally infected bacteria, CRISPR could be used to delete some bacterial genes and replace them with others.

Our use of this technology in human cells allows injection of the DNA-modifying proteins into a human egg while it is being fertilized in a test-tube. Fatal genetic conditions identified in the mother or father in the recent report this was a cardiac abnormality, hypertrophic cardiomyopathy can potentially be corrected pre-natally and, after the correction, the fertilized egg implanted into the mother. An incredibly promising technology, it may allow, as with this cardiac abnormality, children at-risk for sudden death to grow old.

Of course, there are ethical concerns related to this technology. Will it be used to create perfect people, eliminating the diversity that makes us better and stronger? That is up to us. A head-in-the-sand refusal to engage with this is not the answer.

The scientific use of genetics and the concept of diversity, above, is tied to its non-scientific use in the Googles James Damore controversy.

Damore spent 3,400 words to say three things: Women and ethnic minorities are genetically different than (select) men; Those genetic differences are why there are more men than women (and minorities) in positions of power; Refusing to acknowledge this creates all sorts of difficulties and controversy, and is bad for business.

Google, he argues, doesnt allow ideas such as his from being discussed, as people are shamed into silence.

The differences between men and women in the workplace are due to inherent, genetic differences, he claims. What?

There are differences between men and women phenotypic (hair color, eye color) and genotypic (a slight variation in genes coding for gender) for which I am always pleased. Do these explain workplace differences? Pay differences? IQ? No. What we term Intelligence Quotient is heavily influenced by surroundings and upbringing, including social class. Not that inherent ability is meaningless, but environment matters. It is not nurture versus nature, it is nurture and nature.

There is a thoughtful part of Damores thesis, meriting consideration. Diversity is right because it makes us better and stronger; we should welcome diverse voices. He muddles this logical point by claiming women are paid less than men for the same job because they spend more money and, somehow, this is genetic; so much for diversity.

Genetics both does and does not make us who we are. Yes, there are genetic elements within us that make us phenotypically what we are: Brown eyes rather than green; black hair rather than blond. But brilliance? Thoughtfulness? Humanity? Empathy? The ability to work together to solve a problem? To work on a problem day after day until the solution appears?

If there is a genetics to this, it is the ability of multiple genes to be turned on by stimulation in a young person. These on-switches are flipped by parents and a society that loves and provides for the child, allows the child to explore and ask questions. A society that takes the child seriously. A society that does not think of the child, the sum of her phenotype, what she looks like.

The danger from CRISPR technology is it could be used to create the perfect human, eliminating the diversity that makes us better, and our world more beautiful. Damores paper, without using such technology, does just that. He turns women and ethnic minorities into caricatures of themselves, while asserting that it is he who is not appreciated or valued.

Peoples opinions vary, but facts suggest we are surrounded by conservative voices, of which I am a multi-faceted one.

CRISPR technology has downsides; we need international guardrails for its use. But the misuse of genetics to explain our societys flaws is an error of the highest magnitude. Much more dangerous than the CRISPR tool-set, we see it in action every day. In papers such as Mr. Damores, and in the way we think of, and treat, our children, boys and girls.

Our world view, ideology, is like the air we breathe: invisible, almost indescribable. It is this ideological view that allows Damore and sometimes us to simultaneously argue for diversity, while doing all in our power to eliminate it.

Follow Dr. A. Joseph Layon on Twitter @ajlayon or on his health blog, also titled Notes from the Southern Heartland (ajlayon.com). Letters may be sent to: LettersNFTSH@gmail.com.

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Lungs in Space – Texas Medical Center (press release)

August 22nd, 2017 7:46 pm

Space travel can cause a lot of stress on the human body as the change in gravity, radiation and other factors creates a hostile environment. While much is known about how different parts of the body react in space, how lungs are affected by spaceflight has received little attention until now, say researchers at The University of Texas Medical Branch at Galveston and Houston Methodist Research Institute.

That will change, though, once their research project, which aims to grow lungs in space, reaches the International Space Station. UTMB and HMRI researchers say what they learn from the study could have real implications for astronauts, as well as those still on Earth, and could lead to future therapeutics.

We know a lot about what happens in space to bones, muscle, the heart and the immune system, but nobody knows much about what happens to the lungs, said Joan Nichols, a professor of Internal Medicine and Microbiology and Immunology, and associate director for research and operations for the Galveston National Laboratory at UTMB. We know that there are some problems with lungs in space flight, but that hasnt been closely looked into. We hope to find out how lung cells react to the change in gravity and the extreme space environment, and then that can help us protect astronauts in space, as well as the lungs of regular people here on Earth.

This investigation represents the third of four collaborative projects currently active at the HMRIs Center for Space Nanomedicine. The center, directed by Alessandro Grattoni, chairman and associate professor of the Department of Nanomedicine at HMRI, focuses on the investigation of nanotechnology-based strategies for medicine on Earth and in space. The research is supported by the Center for the Advancement of Science in Space, NASA and HMRI.

Scientists from UTMB and HMRI prepared bioreactor pouches that include lung progenitor and stem cells and pieces of lung scaffolding. The scaffolding is the collagen and elastin frame on which lung cells grow. Space X successfully launched the payload containing these pouches Aug. 14 on its 12th Commercial Resupply Services mission (CRS-12) from NASAs Kennedy Space Center in Florida and arrived at the International Space Station Aug. 16. On the ISS, the cells are expected to grow on the scaffold in a retrofitted bioreactor.

Once the lung cells have returned to Earth, researchers will look for the development of fibrosis, the structure of the tissues and the response of immune cells, among other changes and damage that could occur to the lung cells. Lung injuries have been found to accelerate in space, and it is through close study of those cells that therapeutics hopefully could be developed.

Nichols and Dr. Joaquin Cortiella, a professor and director of the Lab of Tissue Engineering and Organ Regeneration at UTMB, have successfully grown lungs in their lab in Galveston, but now they will see if astronauts can do the same in zero gravity. Jason Sakamoto, affiliate professor and former co-chair of the Department of Nanomedicine at HMRI, has applied his novel organ decellularization process and nanotechnology-based delivery systems to support this overall lung regeneration effort.

We have experience working with the Center for the Advancement of Science in Space to study our nanotechnologies in action on the International Space Station, Grattoni said. However, we are extremely excited to be a part of this clinical study, since it may play a pivotal role in how we approach future space travel in terms of preserving astronaut health. What we learn during this fundamental experiment could lead to science-fiction-like medical advancements, where organ regeneration becomes a reality in both deep space and here on Earth.

Researchers at HMRI will take the results from UTMB and work on developing therapeutics that could help astronauts, as well as people on Earth.

This exploration will provide fundamental insight for the collaborative development of cell-based therapies for autoimmune diseases, hormone deficiencies and other issues, Grattoni said.

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Intelligence and the DNA Revolution – Scientific American

August 22nd, 2017 7:45 pm

More than 60 years ago, Francis Crick and James Watson discovered the double-helical structure of deoxyribonucleic acidbetter known as DNA. Today, for the cost of a Netflix subscription, you can have your DNA sequenced to learn about your ancestry and proclivities. Yet, while it is an irrefutable fact that the transmission of DNA from parents to offspring is the biological basis for heredity, we still know relatively little about the specific genes that make us who we are.

That is changing rapidly through genome-wide association studiesGWAS, for short. These studies search for differences in peoples genetic makeuptheir genotypesthat correlate with differences in their observable traitstheir phenotypes. In a GWAS recently published in Nature Genetics, a team of scientists from around the world analyzed the DNA sequences of 78,308 people for correlations with general intelligence, as measured by IQ tests.

The major goal of the study was to identify single nucleotide polymorphismsor SNPsthat correlate significantly with intelligence test scores. Found in most cells throughout the body, DNA is made up of four molecules called nucleotides, referred to by their organic bases: cytosine (C), thymine (T), adenine (A), and guanine (G). Within a cell, DNA is organized into structures called chromosomes. Humans normally have 23 pairs of chromosomes, with one in each pair inherited from each parent.

A SNP (or snip) is a nucleotide at a particular chromosomal region that can differ across people. For example, one person might have the nucleotide triplet TAC whereas another person might have TCC, and this variation may contribute to differences between the people in a trait such as intelligence. Genes consist of much longer nucleotide sequences and act as instructions for making proteinsbasic building blocks of life.

Of the over 12 million SNPs analyzed, 336 correlated significantly with intelligence, implicating 22 different genes. One of the genes is involved in regulating the growth of neurons; another is associated with intellectual disability and cerebral malformation. Together, the SNPs accounted for about 5% of the differences across people in intelligencea nearly two-fold increase over the last GWAS on intelligence. Examining larger patterns of SNPs, the researchers discovered an additional 30 genes related to intelligence.

As a check on the replicability of their results, the scientists then tested for correlations between the 336 SNPs and level of educationa variable known to be strongly correlated with intelligencein an independent sample of nearly 200,000 people who had previously undergone DNA testing. Ninety-nine percent of the time, the SNPs correlated in the same direction with education as they did with intelligence. This finding helps allay concerns that the SNPs associated with intelligence were false positivesin other words, due to chance. More substantively, the finding adds to the case that some of the same processes underlie intelligence and learning. The authors concluded that the results provide starting points for understanding the molecular neurobiological mechanisms underlying intelligence, one of the most investigated traits in humans.

As the cognitive neuroscientist Richard Haier discusses in his excellent new book The Neuroscience of Intelligence, other intelligence research is combining molecular genetic analyses and neuroimaging. In one study, using a sample of 1,583 adolescents, researchers discovered a SNP implicated in synaptic plasticity that was significantly related to both intelligence test scores and to cortical thickness, as measured by magnetic resonance imaging. In animal research, other researchers are using chemogenetic techniques to turn on and off neurons that may be important for intelligence.

Of course, intelligence is not solely the product of DNAand no scientist studying intelligence thinks otherwise. The environment has a major impact on the development of intelligence, or any other psychological trait. All the same, knowledge gained from molecular genetic research may one day be used to identify children at risk for developing serious intellectual deficits, and for whom certain types of interventions early in life may reduce that risk. This research is also providing a scientific foundation for thinking about how brain functioning might be manipulated to enhance intelligence.

The big picture to emerge from research on the neurobiological underpinnings of intelligence and other psychological traits is that the nature vs. nurture debate is, once and for all, over. We are a product of both our genetic makeup and our environments, and the complex interplay between the two. Research aimed at better understanding this interplay will give scientists a richer understanding of both the similarities and differences in our psychological makeup.

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Sunquest Information Systems Announces the General Availability of Sunquest Mitogen: Molecular LIMS and … – Markets Insider

August 22nd, 2017 7:45 pm

TUCSON, Ariz., Aug. 22, 2017 /CNW/ -- Sunquest Information Systems, Inc. announced today the general availability of Sunquest Mitogen, a laboratory information management system (LIMS) and genetic analysis software suite for molecular diagnostics and precision medicine. The comprehensive, integrated molecular and genetics laboratory solution streamlines data and processes across the wet lab and the dry lab from sample accessioning and tracking; to lab workflows, inventory and reagent management; to data generation, genetic analysis, and clinical report creation and delivery.

"Sunquest is committed to advancing technology to allow our laboratory partners to respond to market demand. As medical treatments become more precise, clinicians are looking to laboratories to support precision medicine. This requires taking on complex lab processes and delivering easy-to-understand, clinically actionable reports with short turnaround times and at lower cost," said Matt Hawkins, president/CEO of Sunquest. "The innovation embodied in Sunquest Mitogen makes this much easier."

"We wanted a platform that was paperless, cutting-edge, alive and responsive. But with many LIMS platforms we looked at, attempting to adapt them to molecular testing was like fitting a square peg into a round hole. Sunquest Mitogen is different it is designed for molecular testing," said Dr. Jason Walker, chief scientific officer at MedComp Sciences, a clinical laboratory services company and Sunquest client. "The end result is something we are truly proud of at MedComp. It is an investment we have made in laboratory quality and in our future."

"Sunquest delivers laboratory solutions that support world-class labs," Hawkins added. "Sunquest Mitogen is an innovative, comprehensive and flexible solution for laboratories to simplify and streamline extremely complicated molecular diagnostics and genetic testing processes and analysis. Sunquest Mitogen flexibly fits into existing laboratory workflows and new workflows are quick to build, which is essential in a molecular lab."

Nabil Hafez, senior director of product management for Sunquest's precision medicine solution added, "By taming the extreme complexity of molecular diagnostic laboratory processes and genetic variant analysis, we're creating the right conditions for laboratories to offer these important diagnostic tests."

Sunquest Mitogen laboratory software addresses the high complexity of sample lineage, laboratory processes, and genetic analysis for molecular diagnostics and precision medicine, which requires a laboratory platform designed from its foundation for this kind of laboratory work. In addition, Sunquest Mitogen interfaces with other clinical software, instruments, and services at the lab, and the electronic medical records used by healthcare providers.

The new solution combines the power of two key complimentary acquisitions, GeneInsight and UNIConnect, and optimizes the combined value with a set of pre-defined, out-of-the-box workflows for the LIMS and genetic analysis components.

About Sunquest Information Systems

Sunquest Information Systems Inc. provides diagnostic informatics solutions to more than 1,700 laboratories. Since 1979, Sunquest has helped laboratories and healthcare organizations across the world enhance efficiency, improve patient care, and optimize financial results. Sunquest's solutions enable world-class lab capabilities, including multisite, multi-disciplinary support for complex anatomic, molecular and genetic testing, and engagement with physicians and patients outside the hospitals at the point-of-care.

Headquartered in Tucson, AZ with offices in Boston, London, Dubai, United Arab Emirates, and Bangalore, India, Sunquest is a global leader in healthcare information Technology. For more information, visit http://www.sunquestinfo.com/mitogen

Contact info:Trish MoxamVice President, Corporate Marketingrel="nofollow">trish.moxam@sunquestinfo.com520-237-4024

SOURCE Sunquest Information Systems, Inc.

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Can statins shield us from malaria and typhoid? – Futurity: Research News

August 22nd, 2017 7:45 pm

That statin youve been taking to lower your risk of heart attack or stroke may one day pull double duty, providing protection against a whole host of infectious diseases, including typhoid fever, chlamydia, and malaria.

Scientists recently discovered that a gene variant that affects cholesterol levels could increase risk of contracting typhoid fever. They also learned that a common cholesterol-lowering drug (ezetimibe or Zetia) protects zebrafish against Salmonella typhi, the culprit behind the nasty infection.

The findings clarify the mechanisms that govern human susceptibility to infectious diseaseand also point to possible avenues to protect those most vulnerable to pathogens like the Salmonella bacteria that hijack cholesterol to infect host cells.

This is just the first step, says Dennis C. Ko, assistant professor of molecular genetics and microbiology at Duke University School of Medicine and senior author of the study in the Proceedings of the National Academy of Sciences.

We need to try this approach in different model organisms, such as mice, and likely with different pathogens, before we can consider taking this into the clinic. Whats so exciting is that our study provides a blueprint for combining different techniques for understanding why some people are more susceptible to disease than others, and what can be done about it.

At the turn of the last century, the Irish immigrant Mary Mallon earned the name Typhoid Mary after she sickened more than 50 people in New York City. Mallon was apparently immune to the bacteria she carried, and many people who came into contact with the infamous cook never contracted the disease. What made them different?

That question has long intrigued Ko. However, trying to explain the differences between people when it comes to susceptibility to infectious disease can be tricky: you cant always know whether someone remains healthy because of their genetic constitution or lack of exposure, and even when everyone has been exposed, there are myriad other environmental factors that come into play.

So rather than let the real world run the experiment, researchers used hundreds of cell lines from healthy human volunteers and exposed them to the exact same dose of Salmonella Typhi, which had been tagged with a green fluorescent marker. They then looked for genetic differences that distinguished cells that had higher rates of bacterial invasion from those that didnt.

The findings show that a single nucleotide of DNA in a gene called VAC14 is associated with the level of bacterial invasion in cells. When they knocked out the gene, the cells were invaded more readily and more of the cells glowed brightly with green bacteria. They also unexpectedly found that those more susceptible cells had higher levels of cholesterol, an essential component of cell membranes that Salmonella binds to invade host cells.

Ko wanted to see whether this genetic difference was relevant to humans. By looking through the scientific literature, he decided to reach out to a researcher working in Vietnam, Sarah Dunstan, who had been studying typhoid fever in that country. When Dunstan tested DNA from subjects in a group of 1,000 Vietnamese people, half of whom had typhoid fever and half of whom did not, she found that the VAC14 gene variant was associated with a moderately elevated risk of typhoid fever. The next step was investigating if there was a way to correct that susceptibility.

Discovering the mechanism was important because plenty of people are on cholesterol-lowering drugs, especially statins for high cholesterol, Ko says. We wondered if similar drugs could be given to reduce the risk of Salmonella infection.

Monica Alvarez, a graduate student in Kos lab and lead author of the study, had some experience working with zebrafish, so they decided to start there. She added a cholesterol-lowering drug (ezetimibe or Zetia) to their water and then injected the fish with Salmonella typhi. The treated animals were more likely to clear the bacteria out of their system and survive.

Next, the researchers plan to perform similar experiments in mice and possibly try retrospective studies in humans already taking cholesterol-lowering drugs. They want to explore whether the approach can protect against other infectious diseases, and have already screened other pathogens known to rely on cholesterol at some point during infection.

Our cell-based human genetic approach is a way for us to connect cell biology to human disease, Ko says. By figuring out the mechanism, you can uncover possible therapeutic strategies that you wouldnt think about when just looking at the gene.

The Duke University Whitehead Scholarship, Butler Pioneer Award, the National Institutes of Health, the National Science Foundation, Australian National Health, the Medical Research Council, and the Wellcome Trust funded the work.

Source: Duke University

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Two Genes May Dictate How Social, Friendly You Are – Laboratory Equipment

August 22nd, 2017 7:45 pm

Whether you are a social butterfly or more of a shy homebody may at least in part be attributable to your genes.

A new study by researchers at the National University of Singapore reports that two specific genes play a role in young adults social skills and the number of close friends they have.

The study, published in Psychoneuroendocrinology focused on the CD38 gene and the CD157 gene sequence both of which regulate oxytocin, the human social hormone.

Oxytocin is involved with behaviors such as pair-bonding, mating and child-rearing. It is also linked with more complex emotions and traits like empathy, trust and generosity.

The NUS study included 1,300 Chinese participants living in Singapore. The researchers examined how the expression of CD38 and the sequence changes of CD517 related to the participants social skills.

Their social behaviors were evaluated through questionnaires that asked about participants ability to engage in social relationships, the quality of friendships they have and the value they place on those friendships.

The team found that a higher expression of the CD38 gene and the presence of differences in the CD157 gene sequence correlated with a participant having more close friends and better social skills.

According to study leader Richard Ebstein, professor with NUS Psychology, this study was unique because many other gene studies focus on just structural changes in gene sequences, and how that affects a particular characteristic or disease. But by studying gene expression, Ebstein and fellow researchers were able capture more information than simple structural studies.

The higher expression and changes in the genes accounted for 14 percent of the variance in social skills in the general population. Typically, less than two percent of findings in behavioral genetic association studies rely on genetic variations alone.

The researchers also noted that the results were even more profound in the male participants.

Male participants with the higher gene expressions displayed greater sociality such as preferring activities involving other people over being alone, better communication and empathy-related skills compared to the other participants. Meanwhile, participants with lower CD38 expression reported less social skills such as difficulty in reading between the lines or engaging less in social chitchat, and tend to have fewer friends, said Anne Chong, PhD graduate who conducted the research with Ebstein.

Moreover, while expressed genes can influence behaviors, our own experiences can influence the expression of genes in return. So, whether the genes are expressed to impact our behaviors or not, depend a lot on our social environments. For most people, being in healthy social environments such as having loving and supportive families, friends and colleagues would most likely lessen the effects from disadvantageous genes, added Chong.

Another interesting find the team reported was that a variation in the CD157 gene sequence, which was found to be more common in autism cases in a previous Japanese study, was also associated with the participants innate interest in socializing and building relationships.

Ebstein and Chong believe these results could be useful in developing future intervention therapies or targeted treatments that would help achieve desired results for individuals with special needs. For example, they note that treatments based on new drugs that mimic of enhance the functions of the CD38 and CD157 genes could be one potential approach.

The researchers are now conducting several behavioral economics and molecular genetics studies to investigate the impact of oxytocin on human traits like creativity and openness to exposure.

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Duke researchers discover way to increase flu shot effectiveness – Duke Chronicle

August 22nd, 2017 7:45 pm

Duke researchers have found a way to speed up the production of flu vaccines and make them more effective against seasonal flu virus strains.

Many vaccine companies grow the influenza virus inside of a chicken egg, where a protein called hemagglutinin, orHA, often mutates and causes the vaccine to lose some of its effectiveness. Researchers developed a new way to prompt the virus to express two copies of the HA protein, one specialized to function in the egg and the other in humans. This would prevent the human HA from adapting to the chicken egg and enhance the effectiveness of the vaccine.

We found that this process is very effective. We can grow the virus with two copies of the HA gene in the chicken egg without it acquiring mutations, said Nicholas Heaton, assistant professor of molecular genetics and microbiology in the School of Medicine.

Heaton explained the two primary reasons behind the flu vaccine's "traditionally low efficacy." First, the World Health Organization must predict which flu strains will be prevalent in humans during flu season. This means that an incorrect selection of strain could lead the vaccine to be ineffective even if properly manufactured.

Second, the practice of taking a human flu virus and growing it in a chicken egg can also generate problems, Heaton said. The virus may undergo mutations within the egg and come out with a mutated HA protein, limiting the vaccine's ability to activate the human immune system.

The idea that taking the human virus and inserting it into a chicken eggan obviously different environmentfor growth is what our research studies, Heaton noted. When the vaccine is administered, people create a strong immune response to what theyve been exposed to, which is a weird egg-adapted version of the human virus."

Heaton and his team's solution to the second part of the problem was to develop the technology that allowed the small genome of thehuman influenza virus to accommodate and express more than one HA gene.

Its very hard to manipulate human influenza viruses. To insert another hemagglutinin protein grows the genomes size by about 20 percent," Heaton said. "The methodology of doing so wasnt well known in the field."

There is a lot to be done moving forward before the technology can be implemented into seasonal influenza vaccines.

The goal is to now show that on a year-to-year basis, our methodology is doing something. Nobody has had a mechanism to do a side-to-side comparison, Heaton noted. We know that the flu shot produces antibodies within a person that recognize only the chicken egg-grown virus. No one has formally shown how much better the protection would be if all your antibodies were given the correct human virus because there was no way to do so before this technology.

The next step is to generate the mixture of four viruses that are currently in the flu shot. After generating the viruses, Heaton saidthe new technology needs to be implemented.

We will have to quantify how much better the virus grows using our technology, how much better the immune response is and how much more protective it proves to be, he said.

Link:
Duke researchers discover way to increase flu shot effectiveness - Duke Chronicle

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Science and Society on the Vineyard – Martha’s Vineyard Times

August 22nd, 2017 7:45 pm

Betty Burton is the coordinator of the Adult Lecture Series at the VHPL.

Marthas Vineyard is proud of how it preserves tradition: We cherish life in the slow lane. But this is 2017 and we are part of the modern world, and the latest scientific advancements affect us as much as they do anyone.To explore how science touches all of us in our everyday lives, the Vineyard Haven Public Library, funded in part by a grant from the National Science Foundation, is in the middle of an ambitious summer program on the themes of science and society, science, and everyday life. The grant, administered by a program called Rural Gateways, with the theme of Pushing the Limits, also funds similar programs in 110 other rural libraries. It allows us to participate in a nationwide reading, viewing, and discussion series. Since the beginning of time, humans have imagined and achieved ways to push the boundaries of the physical world.We want to be stronger, smarter, more aware; with great new advances in science and technology, we are finding ways in which all of us are able to push the limits every day. The Pushing the Limits program will explore these ideas in discussions that will include recommended popular books and feature film-quality videos with authors, scientists, and everyday people who thrive on exploring the natural world.Rural Gateways, Pushing the Limits, is funded not only by NSF but also was created through a collaboration of Dartmouth College, the Califa Library Group, the Association of Rural and Small Libraries, Dawson Media Group, and the Institute for Learning Innovation. The speaker series sponsored by this grant will feature programs both this summer and next winter. A science reading group is also meeting on Mondays at 3 pm every three weeks until Sept. 11.Some of the programs so far:Jonathan White presented our very first program, Tides: The Science and Spirit of the Ocean. Mr. White a lifelong mariner traveled the globe for 20 years to examine one of the most primal forces on the planet. The result is a gorgeous exploration of the science, mystery, and history of earths oceanic tides.

In July, Dr. Daniel Goleman presented Altered Traits: Science Reveals How Meditation Transforms Mind, Body, and Brain. Dr. Goleman is an author, psychologist, and science journalist. For 12 years, he wrote for the New York Times, reporting on the brain and behavioral sciences. He is probably best known for his books on emotional intelligence. He has recently written a book with the Dalai Lama, A Force for Good.

On August 10, award-winning science journalist Peter Brannen, presented his new book, The Ends of the World: Volcanic Apocalypses, Lethal Oceans, and our Quest to Understand Earths Past Mass Extinctions. As new, groundbreaking research suggests that climate change played a major role in the most extreme catastrophes in the planets history, Peter took us on a wild ride through the planets five mass extinctions and, in the process, offered us a glimpse of our increasingly dangerous future.

On August 17, Donald Berwick, MD, MPP FRCP, president emeritus and senior fellow, Institute for Healthcare Improvement, and former administrator of the Centers for Medicare and Medicaid Services, spoke about Health Care as it Should Be. A pediatrician, Dr. Berwick has served on the faculty of the Harvard Medical School and Harvard School of Public Health, and on the staff of Bostons Childrens Hospital Medical Center.

On Thursday, August 24, at 7 pm, Dr. Henry Kriegsteins subject will be Digging for Dinosaurs in the Badlands. Dr. Kriegstein will describe his passion for paleontology, organizing private digs in the Dakotas, Wyoming, and Montana, and collecting dinosaur fossils. One fossil, which Dr. Kriegstein bought from a collector in Tucson, turned out to be a completely new, previously undiscovered mini T.rex, now named Raptorex kriegsteini. Every summer, Dr. Kriegstein returns to the Badlands and continues his search for fossils. He considers it a philosophical perspective on the mystery of life and the beauty of the mineral-laced fossils.

On Wednesday, August 30, at 7 pm at the Katharine Cornell Theatre, the library will host a panel CRISPR and Genetic Editing: Uncharted Waters. Leading scientists and bioethicists from Harvard, MIT, Harvard Kennedy School, Stanford and the Woods Hole Oceanographic Institution will discuss the astounding new techniques that make editing DNA nearly as easy as editing an email (well, that is if you have a degree in molecular genetics). Along with vast potential for curing disease, feeding the world, and eliminating pollution come vexing issues of fairness, safety and morality.

Included on this panel will be Dr. Sheila Jasanoff from Harvards Kennedy School. She is one of the worlds leading bioethicists. Simply put, her job is to think and talk about the ethics of the work being done with gene editing. Professor Kevin Esvelt from the MIT Media Lab is director of the Sculpting Evolution group, which invents new ways to study and influence the evolution of ecosystems. His current project is developing mice that are immune to Lyme disease and releasing them on Nantucket. Professor Neel Aluru, of the Biological Labs at Woods Hole Oceanographic Institution, is in the field of environmental epigenetics, which involves studying how environmental factors interact with DNA, turning genes on or off. WHOI is one of the premiere institutions in the world for this kind of research. Professor Jeantine Lunshof, is an assistant professor at the Department of Genetics, University Medical Center Groningen, the Netherlands, and currently a visiting professor at Harvard. She is a philosopher and bioethicist, based in the synthetic biology laboratory of Dr. George Church. As an embedded ethicist, Dr. Lunshof works with scientists at all stages of their research to help identify potential areas of concern. MV Times science columnist, Professor Emeritus Paul Levine from Stanford, will open with introductory remarks about the short history of genetic engineering from the 70s. John Sundman will moderate the panel. His background includes writing and speaking at various institutions about CRISPR. This presentation is funded in part by a grant from National Science Foundation and Califa Library Groups.

As part of this grant, we have started a Science Book Club. So far we have read When the Killings Done by T. C. Boyle and Thunderstruck by Erik Larson. For each meeting we have viewed interviews by the authors, who discuss their take on the science in their stories. On Monday, August 28, at 3 pm we will discuss Arctic Drift by Clive Cussler. The topic of this section is Survival and how it fits into our worlds of science. On Monday, Sept. 11, at 3 pm we will discuss Land of the Painted Caves by Jean Auel and our subject will be Knowledge.

The series will continue into 2018 with more books and speakers to come.

Im happy to say that getting this grant has prompted me to re-establish our connection to the Woods Hole Marine Biological Lab and the Woods Hole Oceanographic Institution, both world-class research institutions that you can almost see with the naked eye from Vineyard Haven.

This series has special importance to me. Long before moving to the Vineyard I was a research scientist in molecular biology labs in Indiana, North Carolina, and Boston. A lot of the work I did was pure research on viral DNA, with no immediate real-world impact. But in North Carolina I was part of a research team that worked on a vaccine for Haemophilus influenza Type B. Before the vaccine, it was the leading cause of meningitis and other invasive bacterial diseases among children younger than 5. But my biggest thrill came when I was a graduate student. I was invited to present my research at Cold Spring Harbor Laboratory in 1978. That was the mecca for all DNA researchers then. I was in the middle of giving my talk when I looked up and saw Francis Crick at the back of the room, standing next to James Watson [geneticists who won the Nobel Prize for solving the structure of DNA], both of them looking right at me. I nearly fainted.

For more information and schedules in one place, visit vhlibrary.org.

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Study finds that you may be as friendly as your genes – Medical Xpress

August 22nd, 2017 7:45 pm

A depiction of the double helical structure of DNA. Its four coding units (A, T, C, G) are color-coded in pink, orange, purple and yellow. Credit: NHGRI

A group of researchers from the National University of Singapore has found that CD38 and CD157 genes that regulate oxytocin, the supreme human social hormone, are associated with the sociality of young individuals. They found that young adults who have higher expression of the CD38 gene as well as differences in CD157 gene sequence are friendlier and more socially adept than others. They have more close friends and show greater social skills

Researchers found that CD38 and CD157 genes that regulate oxytocin, the supreme human social hormone, are associated with the sociality of young individuals

Why some individuals seek social engagement and friendship while others shy away may well be dependent on the expression and sequence of two genes in their bodies.

This novel study of gene expression (i.e. how much of a particular gene is produced in the body) supports the increasing importance of the oxytocin network and its impact on shaping social and communication skills that are important for building friendships. The findings were published in the scientific journal Psychoneuroendocrinology.

The study was conducted by Professor Richard Ebstein and recent NUS PhD graduate, Dr Anne Chong, from the Department of Psychology at NUS Faculty of Arts and Social Sciences, along with Professor Chew Soo Hong from the Faculty's Department of Economics and Professor Lai Poh San from the Department of Paediatrics at NUS Yong Loo Lin School of Medicine.

The team studied over 1,300 healthy young Chinese adults in Singapore in a non-clinical setting. They investigated the correlation between the expression of the CD38 gene and CD157 gene sequence, both of which have been implicated in autism studies, and an individual's social skills as captured by three different questionnaires. These questionnaires evaluated the participants' overall ability to engage in social relationships; their value on the importance of and interest in friendships as well as the number of close friends/confidants they have.

Link between CD38 and CD157 genes, oxytocin and social skills

"We believe that studying the expression of genes captures more information than simple structural studies of DNA sequence since it is the expression of genes that ultimately determine how a gene impacts our traits. Oxytocin plays an important role in these behaviours so it made good sense to our team to study the oxytocin network in relation to social skills important for friendships," said Prof Ebstein.

The results from the study showed that participants with higher expression of CD38 have more close friends, and this association was observed more prevalently among the male participants.

"Male participants with the higher gene expressions displayed greater sociality such as preferring activities involving other people over being alone, better communication and empathy-related skills compared to the other participants. Meanwhile, participants with lower CD38 expression reported less social skills such as difficulty in "reading between the lines" or engaging less in social chitchat, and tend to have fewer friends," said Dr Chong who is the first author of the study and worked under the supervision of Prof Ebstein.

Interestingly, the researchers found that a variation in the CD157 gene sequence that was more common in autism cases in a Japanese study, was also associated with the participants' innate interest in socialising and building relationships.

The evidence suggests that oxytocin, and the CD38 and CD157 genes that govern its release, contribute to individual differences in social skills from one extreme of intense social involvement (i.e. many good friendships and good relationships with peers) to the other extreme of avoiding social contacts with other people that is one of the characteristics of autism. There is no cause for worry however, as the researchers note that majority of people are in between the two extremes.

The researchers found that higher expression of the CD38 gene and differences in the CD157 gene sequence account for 14 per cent of the variance in social skills in the general population a remarkable finding, especially since typically less than two per cent of findings in behavioural genetic association studies rely on genetic variations alone.

"Moreover, while expressed genes can influence behaviours, our own experiences can influence the expression of genes in return. So, whether the genes are expressed to impact our behaviours or not, depend a lot on our social environments. For most people, being in healthy social environments such as having loving and supportive families, friends and colleagues would most likely lessen the effects from disadvantageous genes," said Dr Chong.

The findings from the study help deepen the understanding of the relationship between human sociability and oxytocin. By releasing the social hormone, the CD38 and CD157 genes not only regulate social life at a cellular level but also contribute to the development of human social skills important in establishing social bonds and friendship.

"In our study, we see that an individual's genetic makeup could only go so far as predicting one's social predisposition but does not necessarily trigger the trait since, in the end, it is the expression of gene that determines so. This knowledge would be helpful in coming up with future intervention therapies or targeted treatments to achieve desirable outcomes for individuals with special needs," said Prof Ebstein.

For instance, while there is already considerable research interest in using oxytocin therapy to improve the social skills of individuals with autism, the results so far have been mixed. The findings in this study point to an alternative research direction towards treatments based on new drugs that may mimic or enhance the functions of the CD38 and CD157 genes. The researchers noted however that this line of research has yet to be explored. If proven viable, future therapies may help those clinically determined to have extreme difficulty maintaining social and working relationships with others so that they too could live a better quality of life.

Next steps in research

Co-led by Prof Ebstein and Prof Chew, the Behavioural and Biological Economics and the Social Sciences (B2ESS) Group at the NUS Faculty of Arts and Social Sciences has been investigating the role of genes and hormones on human behaviours, decision making, and a variety of human attitudes including empathy, impulsivity, political attitudes, religiosity and risk attitudes.

The group is currently embarking on several behavioural economics and molecular genetics studies to investigate the impact of oxytocin on the human traits of creativity and openness to exposure, among others.

Explore further: Combination approach may boost social interactions in autism

More information: Anne Chong et al. ADP ribosyl-cyclases ( CD38 / CD157 ), social skills and friendship, Psychoneuroendocrinology (2017). DOI: 10.1016/j.psyneuen.2017.01.011

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Study finds that you may be as friendly as your genes - Medical Xpress

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Biotechnology researchers turn to landfill sites – Phys.Org

August 22nd, 2017 7:44 pm

Collecting leachate from a capped landfill site. Credit: Bangor University

Far from being a load of rubbish, landfill sites should be considered one of the great untapped resources in the search for new enzymes for biotechnology, and could fuel more efficient biofuel production.

A new research paper in mSphere by biologists at Bangor and Liverpool universities has for the first time identified the enzymes which degrade natural materials such as paper and clothing in landfill sites.

James McDonald, from Bangor University's School of Biological Sciences, who led the research said:

"There is a current impetus to search for new enzymes to improve biomass conversion processes. Our hypothesis is that, due to the volume of waste materials they hold, landfill sites represent a repository of unexplored biomass-degrading diversity. There is significant potential to identify new enzymes of ecological and biological significance."

Cellulose and lignin occur naturally in plant-based materials and take longer to decompose than other waste products. As a result of this, the majority of landfill waste consists of lignin and cellulose. In their plant form, they can be used as the basis for biofuel production, and identifying more effective enzymes for this process would improve the yield from this source.

Scientists have been searching for a number of years for the most effective enzymes which break down the cellulose and lignin within the residual natural fibres. The obvious place to search has been in the rumen of sheep and cows, who eat grasses, and the guts of also other plant eaters such as elephants and termites.

Surprisingly perhaps, landfill sites share many of the same characteristics as the digestive systems of these animals: they are dark, anoxic or un-oxygenated spaces, with a high content of cellulose. It was therefore to landfill sites, which are artificially created 'systems', that this group of scientists turned to find new plant-degrading enzymes.

Within in the paper, the authors describe how they used the liquid or 'leachate' within landfill sites as a source of microbes to decompose cotton, and analysed not only the families or taxa of bacteria, but also identified which bacteria produce groups of enzymes to degrade cellulose.

Emma Ransom-Jones, a postdoctoral researcher at Bangor University, and lead author of the study said:

"Understanding exactly how the cellulose and lignin decompose, and the sources of the active enzymes in the process will enable us to determine ways to improve the degradation of waste in landfill sites, and potentially use this as a source for biofuel production."

Explore further: Enzyme shows promise for efficiently converting plant biomass to biofuels

More information: Emma Ransom-Jones et al. Lignocellulose-Degrading Microbial Communities in Landfill Sites Represent a Repository of Unexplored Biomass-Degrading Diversity, mSphere (2017). DOI: 10.1128/mSphere.00300-17

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Biotechnology researchers turn to landfill sites - Phys.Org

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Connecticut a major player in growing biotechnology sector – Danbury News Times

August 22nd, 2017 7:44 pm

Photo: Contributed Photo / Hearst Connecticut Media

Sonics Executive Vice President Lauren Soloff, left, stands with CEC Co-Chairs Joe McGee and William Tong at the Sonics headquarters in Newtown, Conn., in August 2017.

Sonics Executive Vice President Lauren Soloff, left, stands with CEC Co-Chairs Joe McGee and William Tong at the Sonics headquarters in Newtown, Conn., in August 2017.

Connecticut a major player in growing biotechnology sector

The growing biotechnology corridor in the region and improved collaboration between government and manufacturing companies are among the major focuses of the state Commission on Economic Competitiveness, said the co-chairmen of the commission during a recent visit to a Newtown manufacturer.

Life sciences is an area that can really become a major part of Connecticuts growing economy, said Joe McGee, co-chairman of the commission and also the vice president of public policy and programs at Stamford-based Business Council of Fairfield County. Precision medicine and its potential is an economic driver in the state.

McGee, along with co-chairman and state Rep. William Tong, D-147, last week toured Sonics & Materials, a Newtown-based manufacturer of ultrasonic liquid processors, plastic assembly equipment and metal welding systems. Formed in 1969, Sonics has developed a line of advanced ultrasonic liquid processors for applications in DNA sequencing and nanoparticle dispersion.

Its just unbelievable that a company, sitting in Newtown, Connecticut, has a machine that is critical for the sequencing of DNA, McGee said. It just shows you the viability of the Connecticut manufacturing sector.

McGee and Tong said Connecticut is a major player in a burgeoning biotechnology corridor that stretches from New York City into the Nutmeg State. Companies such as Sonics, which employs 75 people, and larger players such as Mount Sinai in Stamford, Boehringer Ingelheim in Ridgefield and Jackson Laboratory in Farmington make Connecticut a force in the life sciences industry, they said.

Tong said the New York City Department of Economic Development recently met with the Connecticut Health Data Collaborative and announced it is investing money to have biotechnology firms migrate into Connecticut.

They need Connecticut and we need them, Tong said. Its a big component of Connecticuts economic future.

Tong said the growing field will help the state reach its lofty expectations associated with the CT 500 program, the goal of which is to create 500,000 private-sector jobs in the state in the next 25 years.

McGee said the biotechnology corridor has a broad reach and it has only recently been targeted as a major economic driver for the state. The Commission on Economic Competitiveness, or CEC, is performing an asset analysis of the industry.

Its one of those things thats been hiding in plain sight, McGee said. There are a lot of places here of significance.

The CEC was created by the state Legislature in 2015 and is made up of lawmakers and private sector leaders with the goal of strengthening and improving the states economic competitiveness.

Lauren Soloff, executive vice president at Sonics, said McGee and Tong talked at length with employees and had a lunch outside after the tour. Soloff, a Westport resident, said the co-chairmen discussed how companies such as Sonics can partner with community colleges and vocational schools to strengthen the curriculum for advanced manufacturing programs.

Its nice to shine a bright light on some of the positive things happening in Connecticut, she said. It was an extremely positive meeting. They are both realists, but optimistic. It was one of the more upbeat visits weve ever had.

cbosak@hearstmediact.com; 203-731-3338

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Connecticut a major player in growing biotechnology sector - Danbury News Times

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Topas Therapeutics lands option deal with Eli Lilly – European Biotechnology

August 22nd, 2017 7:44 pm

Evotec's immunology spin-out Topas Therapeutics has inked a multi-year R&D collaboration with pharma major Eli Lilly. The initial focus of research, which will be financed by Eli Lilly, is on identification of antigens that specifically induce a T regulatory cell response in inflammatory and auto-immune disorders.

Using the company's nanoparticle platform, the collaboration will initially focuson identification of inflammatory or autoimmunity-inducing antigens that trigger immune tolerance through activation of regulatory T cells responses in liver stem cells. Specifically, Topas targets peptide-loaded nanoparticles towards liver sinusoidal endothelial cells (LSECs), which are one of the body's premier sites to induce tolerance against bloodborne antigens by generating peptide-specific regulatory T cells.

Under the terms of the agreement, Topas will be responsible for conducting pre-clinical proof-of-principle studies in collaboration with Lilly to generate drug candidates. According to the contract, Lilly may licence and advance development of all candidates originating from the collaboration. Topas will receive R&D funding and participate in the future success of any compounds in-licensed by Lilly. Financial details of the collaboration have not been disclosed.

Topas Therapeutics was spun out in March from Evotec's subsidiary Bionamics GmbH. The company, which uses a groundbreaking nanoparticle technology to target autoimmune and inflammatory diseases via the induction of antigen-specific immune tolerance in the liver, has14m of venture capital fromEpidarex Capital, EMBL Ventures and Gimv in its pockets. Evotec is its largest shareholder.

Topas has several candidate peptides under preclinical development, the most advanced expected to come to the clinic in 2018 is intended to treat multiple sclerosis.

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Wave Life Sciences Announces Publication of Paper in Nature … – Business Wire (press release)

August 22nd, 2017 7:44 pm

CAMBRIDGE, Mass.--(BUSINESS WIRE)--Wave Life Sciences Ltd. (NASDAQ:WVE), a biotechnology company focused on delivering transformational therapies for patients with serious, genetically-defined diseases, today announced the publication of a new paper in the September issue of Nature Biotechnology. The paper describes a breakthrough method to produce antisense oligonucleotide (ASO) therapeutics with high stereochemical purity as well as rational drug design to control pharmacologic properties in nucleic acid therapeutics drug development more broadly. This publicationof Waves stereopure chemistry platform represents a significant scientific advancement for the oligonucleotide field.

The paper, entitled "Control of phosphorothioate stereochemistry substantially increases the efficacy of antisense oligonucleotides," details a proprietary synthesis process developed by Wave. By applying this method, Wave was able to overcome previous barriers to the scalable synthesis of stereochemically pure oligonucleotides.

These findings represent a breakthrough in the nucleic acid field, said Chandra Vargeese, Ph.D., head of Drug Discovery at Wave Life Sciences. This paper outlines early foundational principles discovered by Wave to engage RNase H1 that can be applied to any ASO sequence. We have demonstrated that stereochemistry plays a central role in oligonucleotide drug design, with the potential to improve stability, duration of activity and specificity. With continued advancements in our proprietary synthesis process, we have developed a highly efficient manufacturing system that may allow for these key findings to translate into next generation nucleic acid therapeutics. We continue to leverage these initial findings to further build our knowledge base and expand our platform capabilities beyond antisense, including our ongoing work in exon skipping, single stranded RNAi and other modalities.

Wave's researchers synthesized rationally designed stereopure isomers of mipomersen, an FDA approved drug comprised of 524,288 stereoisomers. These researchers demonstrated that phosphorothioate stereochemistry substantially impacts the pharmacologic properties of ASOs. Furthermore, their work identified a stereochemical code that can be rationally designed in the stereopure ASOs that promotes targeted RNA cleavage by RNase H1, and that provides a more durable response in mice than is achieved by stereorandom ASOs. Waves research also demonstrated that this stereochemical code improved pharmacologic properties both with mipomersen and with a second sequence (conjugated with GalNAc) that targets APOC3. This stereochemical platform provides a foundation for Wave's current pre-clinical and clinical programs, including two recently initiated trials in Huntington's disease (PRECISION-HD1 and PRECISION-HD2).

"These findings provide a powerful demonstration of Wave's stereopure oligonucleotide platform and its potential to rationally design therapies targeting currently untreatable genetic conditions," said Greg Verdine, founder, board member of Wave Life Sciences. "The ability for the first time to exert precise, synthetically programmable control over the chemistry and stereochemistry of ASOs, and the pharmacologic benefits observed for stereochemical optimization as demonstrated in this paper, offer a compelling basis for Wave's novel approach toward advancing safer and more effective nucleic acid therapies."

About Wave Life Sciences

Wave Life Sciences is a biotechnology company focused on delivering transformational therapies for patients with serious, genetically-defined diseases. Our chemistry platform enables the creation of highly specific, well characterized oligonucleotides designed to deliver superior efficacy and safety across multiple therapeutic modalities. Our pipeline is initially focused on neurological disorders and extends across several other therapeutic areas.

Forward Looking Information

This press release contains forward-looking statements, including statements relating to the significance of the paper; the importance of the papers findings in the field of nucleic acid therapeutics; the distinguishing features of Waves drug development platform and the potential benefits thereof. These statements may be identified by words such as believe, expect, may, plan, potential, will and similar expressions, and are based on current beliefs and expectations. These statements involve risks and uncertainties that could cause actual results to differ materially from those reflected in such statements, including risks and uncertainties associated with Waves stereopure chemistry platform, the drug development and regulatory approval process; and the commercialization, development and acceptance of therapies with new technologies, as well as other risks and uncertainties that are described in the Risk Factors section of Waves most recent annual or quarterly report filed with the U.S. Securities and Exchange Commission. Any forward-looking statements speak only as of the date of this press release and the parties assume no obligation to update any forward-looking statements, whether as a result of new information, future events or otherwise.

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