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How insect wings evolved from the legs of an ancestral crustacean – UChicago News

December 4th, 2020 12:33 am

Using CRISPR-Cas9 gene editing, she systematically disabled five shared leg-patterning genes in Parhyale and in insects, and found those genes corresponded to the six leg segments that are farthest from the body wall. Parhyale, though, has an additional, seventh leg segment next to its body wall. Where did that segment go, she wondered?

And so I started digging in the literature, and I found this really old idea that had been proposed in 1893, that insects had incorporated their proximal [closest to body] leg region into the body wall, she said.

But I still didnt have the wing part of the story, she said. So I kept reading and reading, and I came across this 1980s theory that not only did insects incorporate their proximal leg region into the body wall, but the little lobes on the leg later moved up onto the back and formed the wings. I thought, wow, my genomic and embryonic data supports these old theories.

It would have been impossible to resolve this longstanding riddle without the tools now available to probe the genomes of a myriad of organisms, including Parhyale, which the Patel lab has developed as the most genetically tractable research organism among the crustaceans.

In addition to his role as MBL director, Patel is appointed at UChicago asa professor of Organismal Biology and Anatomy,and ofMolecular Genetics and Cell Biology.

People get very excited by the idea that something like insect wings may have been a novel innovation of evolution, Patel said.But one of the stories that is emerging from genomic comparisons is that nothing is brand new; everything came from somewhere. And you can, in fact, figure out from where.

Citation: Knockout of crustacean leg patterning genes suggests that insect wings and body wall evolved from ancient leg segments,Bruce and Patel,Nature Ecology & Evolution, Dec. 1, 2020. DOI: 10.1038/s41559-020-01349-0

Funding: National Science Foundation

Adapted from anarticle originally posted by the Marine Biological Laboratory

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University of Utah researchers discover genes linked to suicide – KSL.com

December 4th, 2020 12:33 am

SALT LAKE CITY Researchers at University of Utah Health's Huntsman Mental Health Institute have detected more than 20 genes that may play a role in suicide.

The research is the first of its kind, and a Utah mother who is still grieving doesn't find the results surprising.

Michelle Nelson stands in the bright kitchen of her 101-year-old house in Salt Lake City.

"Amethyst, opalite and crystal," she said, picking up the small stones from a dish on the counter.

She collects them to help her heal because picking up the pieces after loss is daunting.

"I take Roan everywhere I go," she said.

Nelson collects heart rocks stones that naturally form into a heart shape which she finds outside.

"It's like a gift from nature that reminds me of him," Nelson said.

Two years ago, her 16-year-old son, Roan McClain, died by suicide.

"It was the biggest shock of my life," she said. "You think your kids are always going to be okay."

Her family has a history of suicide.

In a new study, researchers at the Huntsman Mental Health Institute discovered 22 genes that could have a role in suicide deaths. It establishes that suicide is partially heritable independent of a shared environment.

"We looked at over 3,400 samples from individuals who had lost their lives to suicide in Utah," said Dr. Anna Docherty with the Huntsman Mental Health Institute.

The study, among the first comprehensive genome-wide analyses of suicide death, also found significant genetic cross-connections to psychiatric diseases and behaviors associated with suicide, researchers said.

"Understanding that there is a strong genetic component will destigmatize the subject of suicide," Docherty said.

The goal of the research is to inspire discussions among families and with their healthcare providers to know when to get support, Docherty said.

"If you have a family history of suicide, it really pays to learn about all of the myriad risk factors and ways that you can really promote health in your family."

For Nelson, it inspires hope.

"Maybe, if we could look at our kids and say, 'Hey, you really are at risk. What can we do to get ahead of this?'" she said.

Scientists hope identifying these genes could lead to better predicting who's at risk and finding better ways to help them.

In the meantime, Nelson continues to find comfort in nature, and her collection of heart rocks.

"When you lose someone close to you, your whole life changes," she said. "You have to notice the little things. You have to go back to those small things, like the rocks."

Next, researchers plan to dig into the molecular genetics of suicides to understand the links, and to find drug therapies.

If you or someone you love needs help, call the Utah Crisis Line at 801-587-3000.

If you or someone you know is struggling with thoughts of suicide, call the suicide prevention hotline at 1-800-273-TALK.

Crisis Hotlines

Online Resources

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Preparations in advanced stage for establishing disease control centre on pattern of CDC Atlanta – The News International

December 4th, 2020 12:33 am

KARACHI: On the pattern of the Centre for Disease Control and Prevention (CDC), Atlanta, United States, Pakistan has been trying to establish its own CDC, for which preparations have been in an advanced stage, to deal with epidemics of communicable and non-communicable diseases along with emerging infectious ailments and pandemics like Covid-10, and advise the national and provincial governments in dealing with national health emergencies, The News has learnt.

Yes, we are in the advanced stage of establishing a Centre for Disease Control Pakistan like they have in the United States, China and many other countries of the world. Establishing such an institute was my long-standing dream, which is going to materialise within a few weeks or months, Special Assistant to Prime Minister (SAPM) on Health Dr Faisal Sultan told The News on Thursday.

He said a draft legislation had been prepared for the establishment of the proposed institute and it was being vetted by experts while his team was also in the process of looking for epidemiologists, microbiologists, molecular genetics experts, virologists and other experts to be part of the centre.

Either this institute would be established through a [presidential] ordinance or an Act of Parliament but all the legal formalities are being completed in this regard. This dream of mine is going to materialise very soon but it would be a great service to the nation, Dr Sultan said, adding that not only him but several other infectious diseases and public health experts had been feeling the need for having such an institute in Pakistan for very long.

He maintained that after every crisis and emergency, a need was felt to establish centres like the National Command and Operation Centre (NCOC) was established after the Covid-19 pandemic and the National Emergency Operation Centre (NEOC) was set up for polio eradication. He added that this reactionary practice should come to end now and there should be a permanent institution like the CDC Atlanta to deal with such emergencies and plan for future threats.

To a query, Dr Sultan said the governments of the US, China and England had offered their assistance for establishing the CDC Pakistan, adding that in addition to foreign governments, Pakistani health experts working in the US, Europe and other parts of the world were also very enthusiastic in this regard and willing to help the country in having a world-class centre for disease control and prevention.

I have spoken to the ambassadors of the United States and China and the British High Commissioner in Pakistan and they all are willing to help us in this regard. There are several leading Pakistani health scientists and experts who are working at such institutions and they too are very enthusiastic and willing to support us in this endeavour, the SAPM maintained.

When asked when he felt the need for the establishment of a CDC like centre in the presence of the National Institute of Health (NIH), Islamabad, he said the NIH in its present form was not fulfilling the function of a centre for disease control and prevention despite having a national laboratory.

The NIH has a different function and it is now heading in a right direction under its current leadership but unfortunately it is not serving the purpose for which it was established. Our proposed centre for disease control would be a quite different institution, which would gather information about diseases, analyse them and recommend actions and give guidance to the authorities on all aspects of health, Dr Sultan said, adding that after its establishment, there would be no need for setups like the NCOC and the NEOC.

The CDC Pakistan would not only be working on the prevention and control of infectious and non-infectious diseases in Pakistan but it would also be keeping an eye over road traffic accidents, other disasters involving trauma and emergencies in the country and presenting its recommendations to lower these incidents as well as managing them properly, he remarked.

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UWI professor: Covid19 vaccine will be safe – TT Newsday

December 4th, 2020 12:33 am

NewsClint Chan Tack3 Days Ago

UWI Professor of Molecular Genetics and Virology Christine Carrington has told the population that any covid19 vaccine administered in TT will be safe.

Her assurances were supported by statements from epidemiologist Dr Avery Hinds and nurse Grace Sookchand, manager of the Health Ministry's expanded programme on immunisation, about strategies for the vaccine's administration.

Modernas mRNA-1273, Oxford University and AstraZenecas AZD1222, and Pfizer and BioNTech's BNT162 are the three candidate vaccines which are currently undergoing phase three trials.

At the virtual health news conference on Monday, Carrington said there was an "avalanche of neatly packaged misinformation" about these vaccines.

She explained the reason extensive trials are done on vaccines is to ensure that they work.

"Long before reach phase three trials, you have other stages of trials where you are looking specifically at safety."

To date, Carrington continued, the vaccines appear to be very safe, She added that they would not have been administered to 30,000 people in the phase three trials if this was not so. But Carrington said additional safety information about the vaccines would be obtained in the phase three trials.

Hinds reiterated that the first phase of vaccination will focus on people who are most exposed to covid 19. This includes frontline responders (such as health care workers), people over 60 and people with illnesses such as cancer. He said as additional doses of the vaccine are received, policies and strategies will be elaborated to cover the wider population."

On the vaccination of prisoners, Hinds explained this was the responsibility of the Prison Service's medical personnel. He said the ministry, through the county medical officers of health, provides the service with guidance and technical support if needed.

Hinds also said PCR testing and antigen testing (which is soon to be rolled out) are the main strategies for covid19 testing in TT, and the latter will provide "an additional layer of testing capacity."

Antibody testing is not being used now, he said, because "we are testing to reduce the risk of spread in active cases, and antibodies only show up later on in your disease process."

Sookchand said chillers to store a covid19 vaccine will be placed at the Couva Medical and Multi-Training Facility, Nipdec's Central Stores in Chaguaramas and a location in Tobago.

She explained the specific type of chiller to be used will be influenced by the characteristics of the vaccine acquired. Sookchand added that ultra-low-temperature freezers would be sourced if necessary.

She also said health facilities for the administration of phase one of the vaccine have been identified and staff are being trained.

With TT having consistent vaccine administration levels in the high 90 per cent range, Sookchand was confident of a covid19 vaccine being successfully provided to the public.

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Tech : Public and private laboratories validated to perform the Covid 19 test – Explica

December 4th, 2020 12:33 am

To perform a Covid 19 test, the laboratory must be validated.In public laboratories the test has no cost, but it does generate an expense.Know the average cost of the Covid 19 test in private laboratories.

One of the main factors to avoid the spread of the coronavirus is the timely taking of a Covid 19 test to reduce the number of infections.According to the Ministry of Health, Mexico adds 105 thousand 655 deaths from Covid 19 and one million 107 thousand 71 accumulated confirmed cases.In the last few hours alone, 6,388 new confirmed cases of Covid 19 were registered in Mexico.Given this, the WHO assured that Mexico is in a bad situation in the face of the Covid 19 epidemic, which saw the number of cases and deaths double between mid and late November, warned Tedros Adhanom Ghebreyesus.

Related Notes:This is what a hospitalization for Covid 19 costs in MexicoCoronavirus: Medicines and healing materials cost 60% more in Mexico due to pandemicThe debts of Covid 19 patients and their families increase in Mexico

In addition to social isolation, another measure to contain the pandemic is to carry out the Covid 19 test in a timely manner and in Mexico there are 168 validated public and private laboratories.According to the Ministry of Health, the places authorized to test for Covid 19 have been growing, as it is necessary to have the recognition of the Institute for Epidemiological Diagnosis and Reference (InDRE).

There is the IMSS Division of Epidemiological Surveillance Laboratories that made three laboratories available in the entities.Support Laboratory for Epidemiological Surveillance of the Western Research Center (CIBO), Guadalajara, Jalisco.Laboratory of Support for Epidemiological Surveillance of the Center for Biomedical Research of the Northwest (CIBIN), Monterrey, Nuevo Len.Support Laboratory for Epidemiological Surveillance of the High Specialty Medical Unit in Yucatn (UIMY).The Laboratories to Support Epidemiological Surveillance (LAVES) are also available:National Institute of Respiratory Diseases.National Institute of Medical Sciences and Nutrition Salvador Zubirn.General Hospital of Mexico.November 20 Hospital (ISSSTE).37 Central Laboratory of Epidemiology, CMN La Raza (IMSS).Also in the public sector are:Childrens Hospital of Mexico, Federico Gmez.Hospital Central Sur Alta Especialidad PEMEX.New Civil Hospital of Guadalajara, Dr. Juan I. Menchaca .Molecular Biology and Biosafety Laboratory of the Naval Medical Center.Laboratory of Microbiology and Molecular Diagnosis of the Department of Immunobiochemistry, National Institute of Perinatology.Regional Hospital of High Specialty of Ixtapaluca.Virology Laboratory of the National Institute of Pediatrics.Infectology Laboratory of the National Rehabilitation Institute, Luis Guillermo Ibarra Ibarra.Central Military Hospital, dependent on the General Directorate of Military Health and the Secretariat of National Defense.Hospital Jurez de Mxico.

ABC Medical Center, Observatory Campus.Angeles Interlomas HospitalOlartey Akle, Bacteriologists.Lister Laboratories.Biomedical Laboratories of Mrida.LABIOMOLA.Spanish Hospital of Mexico City.South Medical.Aries Diagnostic Group.CARPERMOR Laboratory.ORTHIN Specialized Reference.Puebla Clinical Laboratories.Worthy Health.Jurez Laboratory.BIOQUIMIA Corporate Group, Siglo XXI.LSG Clnicos Mexicali.LANS, Reference Laboratories.Molecular Diagnostic Laboratory AL Gens.Diagnostic Molecular Biology (BIMODI).Molecular Genetic Pathology (PGM Laboratory).Central DNA.Clinical Diagnostic Advisors.Vitagenesis.Genodiagnostics.Laboratory of Surgical Pathology and Cytology of Puebla.GENOLIFE.Certus Laboratory.Specialized Developments in Biotechnology and Molecular Diagnosis, (Denatbio).Laboratory of Specialized Genetic Analysis Mexico, (LAGEM).Alfonso Ramos Laboratory.DIAGNOMOL Laboratories.Analytical and Diagnostic Unit,San jose hospital.LSD Clinical Analysis Diagnosis.La Hoz clinical diagnoses.Mrida Clinical Laboratories.SERVACARE.Immunological Specialties Laboratories.Christus Muguerza Laboratory.Hospital San ngel Inn University.Clinical Laboratory of the Campestre.Chontalpa Laboratories.Micro-Tec.Santa Maria Group.CENEBA,Diagnostic Image.LACLICSA Laboratories.CEDIMI Laboratories.Diagnostic and Associated Laboratories.PrimeLab Molecular Diagnostics.SIMNSA Molecular Biology Laboratory.GD Technologies.Huella Gnica, SA de CV

Also in some public universities they take the Covid 19 test sample.Center for Research in Health Sciences and Biomedicine (CICSaB), Autonomous University of San Luis Potos.Department of Genetics and Molecular Physiology of the Institute of Biotechnology (IBT) of the Autonomous University of Mexico (UNAM).Bioprocess Development and Research Unit of the National School of Biological Sciences (UDIBI-ENCB) of the National Polytechnic Institute (IPN).

Biosafety Laboratory for the Diagnosis and Research of Emerging Diseases, Cinvestav.Department of Cellular and Developmental Biology, of the Institute of Cellular Physiology, of the UNAM.Virology Laboratory, Institute of Biomedical Research, UNAM. Laboratory of Microbial Molecular Immunology of the Faculty of Medicine, UNAM.Infectious Diseases Research Laboratory, UNAM.Institute of Immunodeficiencies and HIV Research of the University Center for Health Sciences, University of Guadalajara (Ude-G).Laboratory for the Diagnosis of Emerging and Reemerging Diseases of the UdeG.CIR-Biomedical Virology Laboratory of the Autonomous University of Yucatn.Molecular Medicine Laboratory, of the Autonomous University of Zacatecas Francisco Garca Salinas.Molecular Microbiology Laboratory, of the Autonomous University of Quertaro.PABIOM Laboratory, of the Autonomous University of Chihuahua.Genomic Services Laboratory (Labsergen) of Cinvestavs Advanced Genomics Unit.Diagnostic and Research Laboratory of the Autonomous University of Guerrero.National Laboratory of Agricultural, Medical and Environmental Biotechnology of the Potosino Institute of Scientific and Technological Research.Food and Development Research Center, in Hermosillo, Sonora.Food and Development Research Center, in Mazatln, Sinaloa.Food and Development Research Center, in Culiacn, Sinaloa.National Institute of Genomic Medicine.National Laboratory of the Autonomous University of Nayarit.Biosafety Laboratory, Center for Nanosciences and Nanotechnology, UNAM.Molecular Diagnostic Laboratory of the University of Colima.Preclinical Research Unit of the UNAM.Biosafety Laboratory of the Ensenada Center for Scientific Research and Higher Education.Bioseguro Laboratory of the Center for Biological Research of the Northwest.Clinical Services Unit of the Autonomous University of Quertaro.Infectology Laboratory, Autonomous University of Nuevo Len.Molecular Biology Laboratory of the University Center of the Coast University of Guadalajara.Reference Laboratory Analysis and Diagnosis in Aquaculture Health, Hermosillo Unit.Center for Molecular Diagnosis and Personalized Medicine, University of Monterrey.Proteogenic Unit, Institute of Neurobiology, UNAM.Virology Laboratory of the Center for Research and Assistance in Technology and Design of the State of Jalisco.Research Unit Faculty of Veterinary Medicine and Zootechnics, UNAM.Laboratory of the Transdisciplinary Institute for Research and Services of the UdeG.Campus CUSUR Laboratory, of the UdeG.Molecular Virology Laboratory of the Cell Dynamics Research Center of the Autonomous University of the State of Morelos.Yucatan Scientific Research Center.Center for Genomic Biotechnology, National Polytechnic Institute, Reynosa, Tamaulipas.

The Covid 19 tests have no cost in public hospitals and state laboratories, although they generate an expense of approximately 1,492 pesos, according to the Director of Diagnosis and Reference of the InDRE, Irma Lpez Martnez, while in the private laboratories of the City of Mexico offer the test for a price between 3,300 and 3,400 pesos.Irma Lpez Martnez explained that it is necessary to first evaluate the type of test, because although they are all polymerase chain reaction (PCR), they have different methodologies. Remember that only a doctor can evaluate if you need to take a Covid 19 test according to the symptoms you present.

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Scientists Reverse the Aging Clock: Restore Age-Related Vision Loss Through Epigenetic Reprogramming – SciTechDaily

December 4th, 2020 12:33 am

Harvard Medical School scientists have successfully restored vision in mice by turning back the clock on aged eye cells in the retina to recapture youthful gene function.

The teams work, described today (December 2, 2020) in Nature, represents the first demonstration that it may be possible to safely reprogram complex tissues, such as the nerve cells of the eye, to an earlier age.

In addition to resetting the cells aging clock, the researchers successfully reversed vision loss in animals with a condition mimicking human glaucoma, a leading cause of blindness around the world.

The achievement represents the first successful attempt to reverse glaucoma-induced vision loss, rather than merely stem its progression, the team said. If replicated through further studies, the approach could pave the way for therapies to promote tissue repair across various organs and reverse aging and age-related diseases in humans.

Our study demonstrates that its possible to safely reverse the age of complex tissues such as the retina and restore its youthful biological function, said senior author David Sinclair, professor of genetics in the Blavatnik Institute at Harvard Medical School, co-director of the Paul F. Glenn Center for Biology of Aging Research at HMS and an expert on aging.

Sinclair and colleagues caution that the findings remain to be replicated in further studies, including in different animal models, before any human experiments. Nonetheless, they add, the results offer a proof of concept and a pathway to designing treatments for a range of age-related human diseases.

If affirmed through further studies, these findings could be transformative for the care of age-related vision diseases like glaucoma and to the fields of biology and medical therapeutics for disease at large, Sinclair said.

For their work, the team used an adeno-associated virus (AAV) as a vehicle to deliver into the retinas of mice three youth-restoring genesOct4, Sox2 and Klf4that are normally switched on during embryonic development. The three genes, together with a fourth one, which was not used in this work, are collectively known as Yamanaka factors.

The treatment had multiple beneficial effects on the eye. First, it promoted nerve regeneration following optic-nerve injury in mice with damaged optic nerves. Second, it reversed vision loss in animals with a condition mimicking human glaucoma. And third, it reversed vision loss in aging animals without glaucoma.

The teams approach is based on a new theory about why we age. Most cells in the body contain the same DNA molecules but have widely diverse functions. To achieve this degree of specialization, these cells must read only genes specific to their type. This regulatory function is the purview of the epigenome, a system of turning genes on and off in specific patterns without altering the basic underlying DNA sequence of the gene.

This theory postulates that changes to the epigenome over time cause cells to read the wrong genes and malfunctiongiving rise to diseases of aging. One of the most important changes to the epigenome is DNA methylation, a process by which methyl groups are tacked onto DNA. Patterns of DNA methylation are laid down during embryonic development to produce the various cell types. Over time, youthful patterns of DNA methylation are lost, and genes inside cells that should be switched on get turned off and vice versa, resulting in impaired cellular function. Some of these DNA methylation changes are predictable and have been used to determine the biologic age of a cell or tissue.

Yet, whether DNA methylation drives age-related changes inside cells has remained unclear. In the current study, the researchers hypothesized that if DNA methylation does, indeed, control aging, then erasing some of its footprints might reverse the age of cells inside living organisms and restore them to their earlier, more youthful state.

Past work had achieved this feat in cells grown in laboratory dishes but fell short of demonstrating the effect in living organisms.

The new findings demonstrate that the approach could be used in animals as well.

Lead study author, Yuancheng Lu, research fellow in genetics at HMS and a former doctoral student in Sinclairs lab, developed a gene therapy that could safely reverse the age of cells in a living animal.

Lus work builds on the Nobel Prize winning discovery of Shinya Yamanaka, who identified the four transcription factors, Oct4, Sox2, Klf4, c-Myc, that could erase epigenetics markers on cells and return these cells to their primitive embryonic state from which they can develop into any other type of cell.

Subsequent studies, however, showed two important setbacks. First, when used in adult mice, the four Yamanaka factors could also induce tumor growth, rendering the approach unsafe. Second, the factors could reset the cellular state to the most primitive cell state, thus completely erasing a cells identity.

Lu and colleagues circumvented these hurdles by slightly modifying the approach. They dropped the gene c-Myc and delivered only the remaining three Yamanaka genes, Oct4, Sox2 and Klf4. The modified approach successfully reversed cellular aging without fueling tumor growth or losing their identity.

In the current study, the researchers targeted cells in the central nervous system because it is the first part of body affected by aging. After birth, the ability of the central nervous system to regenerate declines rapidly.

To test whether the regenerative capacity of young animals could be imparted to adult mice, the researchers delivered the modified three-gene combination via an AAV into retinal ganglion cells of adult mice with optic nerve injury.

For the work, Lu and Sinclair partnered with Zhigang He, HMS professor of neurology and of ophthalmology at Boston Childrens Hospital, who studies optic nerve and spinal cord neuro-regeneration.

The treatment resulted in a two-fold increase in the number of surviving retinal ganglion cells after the injury and a five-fold increase in nerve regrowth.

At the beginning of this project, many of our colleagues said our approach would fail or would be too dangerous to ever be used, said Lu. Our results suggest this method is safe and could potentially revolutionize the treatment of the eye and many other organs affected by aging.

Following the encouraging findings in mice with optic nerve injuries, the team partnered with colleagues at Schepens Eye Research Institute of Massachusetts Eye and Ear Bruce Ksander, HMS associate professor of ophthalmology, and Meredith Gregory-Ksander, HMS assistant professor of ophthalmology. They planned two sets of experiments: one to test whether the three-gene cocktail could restore vision loss due to glaucoma and another to see whether the approach could reverse vision loss stemming from normal aging.

In a mouse model of glaucoma, the treatment led to increased nerve cell electrical activity and a notable increase in visual acuity, as measured by the animals ability to see moving vertical lines on a screen. Remarkably, it did so after the glaucoma-induced vision loss had already occurred.

Regaining visual function after the injury occurred has rarely been demonstrated by scientists, Ksander said. This new approach, which successfully reverses multiple causes of vision loss in mice without the need for a retinal transplant, represents a new treatment modality in regenerative medicine.

The treatment worked similarly well in elderly, 12-month-old mice with diminishing vision due to normal aging. Following treatment of the elderly mice, the gene expression patterns and electrical signals of the optic nerve cells were similar to young mice, and vision was restored. When the researchers analyzed molecular changes in treated cells, they found reversed patterns of DNA methylationan observation suggesting that DNA methylation is not a mere marker or a bystander in the aging process, but rather an active agent driving it.

What this tells us is the clock doesnt just represent timeit is time, said Sinclair. If you wind the hands of the clock back, time also goes backward.

The researchers said that if their findings are confirmed in further animal work, they could initiate clinical trials within two years to test the efficacy of the approach in people with glaucoma. Thus far, the findings are encouraging, researchers said. In the current study, a one-year, whole-body treatment of mice with the three-gene approach showed no negative side effects.

Reference: 2 December 2020, Nature.DOI: 10.1038/s41586-020-2975-4

Other authors on the paper include Benedikt Brommer, Xiao Tian, Anitha Krishnan, Margarita Meer, Chen Wang, Daniel Vera, Qiurui Zeng, Doudou Yu, Michael Bonkowski, Jae-Hyun Yang, Songlin Zhou, Emma Hoffmann, Margarete Karg, Michael Schultz, Alice Kane, Noah Davidsohn, Ekaterina Korobkina, Karolina Chwalek, Luis Rajman, George Church, Konrad Hochedlinger, Vadim Gladyshev, Steve Horvath and Morgan Levine.

This work was supported in part by a Harvard Medical School Epigenetics Seed Grant and Development Grant, The Glenn Foundation for Medical Research, Edward Schulak, the National Institutes of Health (grants R01AG019719, R37AG028730, R01EY026939, R01EY021526, R01AG067782, R01GM065204, R01AG065403, R01EY025794, R24EY028767 and R21EY030276), and the St. Vincent de Paul Foundation.

Relevant disclosures: David Sinclair is a consultant to, inventor of patents licensed to, board member and equity owner of Iduna Therapeutics, a Life Biosciences company developing epigenetic reprogramming therapies, and an unpaid consultant to Zymo Research, an epigenetic tools company. Yuancheng Lu, Luis Rajman and Steve Horvath are equity owners of Iduna Therapeutics. George Church and Noah Davidsohn are co-founders of Rejuvenate Bio.

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23-cGAMP triggers a STING- and NF-Bdependent broad antiviral response in Drosophila – Science

December 4th, 2020 12:33 am

STINGing viruses without interferon

The adaptor protein STING induces the production of antiviral interferons in response to the cyclic dinucleotide 23-cGAMP generated as a danger signal during viral infection of mammalian cells. Drosophila have a STING ortholog but do not produce interferons. Cai et al. found that exogenously administered 23-cGAMP protected Drosophila against multiple DNA and RNA viruses in a manner dependent on STING and the transcription factor Relish, an ortholog of NF-B. This antiviral immunity did not involve autophagy, a cellular process in which STING plays an evolutionarily conserved role and that can restrict viral replication, or RNA interference, an antiviral response in Drosophila. These results suggest that 23-cGAMP as a viral danger signal is evolutionarily older than previously suspected and that STING was incorporated into the interferon response during vertebrate evolution.

We previously reported that an ortholog of STING regulates infection by picorna-like viruses in Drosophila. In mammals, STING is activated by the cyclic dinucleotide 23-cGAMP produced by cGAS, which acts as a receptor for cytosolic DNA. Here, we showed that injection of flies with 23-cGAMP induced the expression of dSTING-regulated genes. Coinjection of 23-cGAMP with a panel of RNA or DNA viruses resulted in substantially reduced viral replication. This 23-cGAMPmediated protection was still observed in flies with mutations in Atg7 and AGO2, genes that encode key components of the autophagy and small interfering RNA pathways, respectively. By contrast, this protection was abrogated in flies with mutations in the gene encoding the NF-B transcription factor Relish. Transcriptomic analysis of 23-cGAMPinjected flies revealed a complex response pattern in which genes were rapidly induced, induced after a delay, or induced in a sustained manner. Our results reveal that dSTING regulates an NF-Bdependent antiviral program that predates the emergence of interferons in vertebrates.

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Bringing Back Tomato’s Genetic Diversity That Was Lost in Domestication – Technology Networks

December 4th, 2020 12:31 am

Thousands of years ago, people in South America began domesticating Solanum pimpinellifolium, a weedy plant with small, intensely flavored fruit. Over time, the plant evolved into S. lycopersicum - the modern cultivated tomato.

Although today's tomatoes are larger and easier to farm compared with their wild ancestor, they also are less resistant to disease and environmental stresses like drought and salty soil.

Researchers from Boyce Thompson Institute, led byZhangjun Fei, created a high-quality reference genome for S. pimpinellifolium and discovered sections of the genome that underlie fruit flavor, size and ripening, stress tolerance and disease resistance.The results were publishedinNature Communicationson November 16.

"This reference genome will allow researchers and plant breeders to improve traits like fruit quality and stress tolerance in the tomato," said Fei, "for example, by helping them discover new genes in the modern tomato as well as by reintroducing genes from S. pimpinellifolium that were lost over time as S. lycopersicum was domesticated."

Fei is a BTI faculty member and co-corresponding author on the paper, as well as an adjunct professor in Cornell University's School of Integrative Plant Science (SIPS).

Although other groups had previously sequenced S. pimpinellifolium, Fei said this reference genome is more complete and accurate, thanks in part to cutting-edge sequencing technologies that are able to read very long pieces of DNA.

"Older sequencing technologies that read short pieces of DNA can identify mutations at the single-base level," said Shan Wu, a postdoctoral scientist in Fei's lab and co-corresponding author on the paper. "But they aren't good at finding structural variants, like insertions, deletions, inversions or duplications of large chunks of DNA."

"Many known traits of the tomato are caused by structural variants, so that is why we focused on them," Fei said. "Structural variants also are understudied because they are more difficult to identify."

Fei's group compared their S. pimpinellifolium reference genome to that of the cultivated tomato, called Heinz 1706, and found more than 92,000 structural variants.

The researchers then combed thetomato pan-genome, a database with the genomes of more than 725 cultivated and closely related wild tomatoes, and discovered structural variants related to many important traits. For example, the modern cultivated tomato has some genomic deletions that reduce their levels of lycopene, a red pigment with nutritional value, and an insertion that reduces their sucrose content.

Jim Giovannoni, BTI faculty member and co-author of the study, notes that many consumers are disappointed in the quality and flavor of modern production tomatoes because past breeding efforts ignored those traits in favor of performance and yield.

"Identification of the additional genetic diversity captured in the S. pimpinellifolium genome provides breeders with opportunities to bring some of these important features back to store-bought tomatoes," said Giovannoni, who is also an adjunct professor in SIPS and a scientist with the U.S. Department of Agriculture's Agricultural Research Service.

The researchers found many other structural variants that could be of interest to plant breeders, including variants in numerous disease-resistance genes and in genes involved in fruit size, ripening, hormonal regulation, metabolism, and the development of flowers, seeds and leaves.

The group also found structural variants associated with regulating the expression of genes involved in the biosynthesis of lipids in fruit skin, which could help improve the fruit's post-harvest performance.

"So much genetic diversity was lost during tomato domestication," Fei said. "These data could help bring some of that diversity back and result in tomatoes that taste better, are more nutritious and more resilient."

Reference: Wang X, Gao L, Jiao C, et al. Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding. Nature Communications. 2020;11(1):5817. doi:10.1038/s41467-020-19682-0.

This article has been republished from the following materials. Note: material may have been edited for length and content. For further information, please contact the cited source.

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Accumulated genetic variations: What they are and why they matter to a complete health picture – MedCity News

December 4th, 2020 12:31 am

Genes are by no means a crystal ball, but they can be used to forecast susceptibility to a variety of conditions, from cancers and heart disease to chronic inflammatory conditions. As such, they can help healthcare professionals and patients make better care decisions.

Generally speaking, whenpeople today think about genetic predispositions, theythink about their parents and family trees.However, those inherited genetic variationsbequeathed by ourparents and grandparents are only a portion ofacomplete genetic picture and often not the most revealing one.Thegenetic variationsmost commonly linked to disease are actually?not?the ones from your parents; rather, they areacquiredas one ages.

Mom and Dad Cant Take All the Heat forAll Health ChallengesUnlike inheritedgenetic predispositions,accumulatedgenetic changes(otherwise known as somatic)are the result ofenvironmental influences, such as smoking, chemicals or ultra-violet radiation. They can also stem from common errorscells make as they duplicate themselves over time.The expansion of these detrimental variations cause damage to DNA within blood cells,aphenomenon known as clonal hematopoiesis (CH), whichincreases susceptibility to many diseases, including many types of cancer.

Germline variations in genes still indicate potential vulnerabilities, with one in five healthy adults estimated to carry an inherited marker. However, these genetic abnormalities represent a static metric. Once individuals are tested for inherited variations, they will never need to do so again. Whats more, many of the predispositions that surfaced through this testing can be addressed through lifestyle and medical interventions. It boils down to being aware of them.

Somatic changes, on the other hand, can happen at any stage of life. While many of these changes have no clinical ramifications, some of them can exacerbate predispositions inherited from our parents because the disease is often the result of multiple genetic variations banding together, inherited or acquired.

The chances of an acquired variation accumulating and accelerating within the body increase significantly as we age, generally after the age of 40 and growing each decade. This could drastically change a patients health profile, casting inherited vulnerabilities into a new light without any warning or symptoms.

Understanding Accumulated VariationsA growing body of research links somatic changes to an increased likelihood of blood cancers and cardiovascular disease, both heart disease and stroke. The same research reveals that these accumulated genetic variations contribute to infection and severe inflammatory reactions, some of which are associated with severe cases of Covid-19.

A study conducted byJAMA Cardiologyexplores theconnectionbetween accumulated genetic change anda pro-inflammatory immune response that resembles the exaggerated cytokine release syndrome (CRS)experienced by patients with severeCovid-19.Notably,the researchfoundthat patients who experienced the most extreme inflammatory response carried variationsTET2 and DMNT3A, both of which accumulate in genes over time.

Another research report published inCancersanalyzingpatients hospitalized with severe Covid-19disease found a much higher frequency of clonal hematopoiesis (CH) of indeterminate potential (sometimes called clonal hematopoiesis of indeterminate potential or CHIP) ),an age-associated condition in cells,in all age groups.

Additionally,accumulatedDNA damage to the JAK2 gene has been found in alargeproportion of cancer-free patients with venous thrombosis, a known complicationof Covid-19.While preliminary,the findingsdemonstratecompellingcorrelations betweensomaticgenetic change andCovid-19 severity that could be used to identify patients prone to complications early, intervene soonerand inform treatment strategies.

It is believed thatproviders can applythese correlations to other areas of care toassess an individuals susceptibilityto a wide range of diseases, and ultimately improve and extend quality of life.

Improving Care Decisions with Somatic insightsAugmenting currenthealth assessmentsand care strategies with accumulated geneticdatacan open new pathways for disease detection, response and prevention.The scientificand medicalcommunitieshaveonly scratched the surface ofwhat we can learn from these insights. Even so,understanding somatic damage showsgreatpromise for helping individualsstay ahead of their health concerns and respond in a more informed way.

Photo: Andy, Getty Images

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The role of the microbiota in human genetic adaptation – Science

December 4th, 2020 12:31 am

Getting to the guts of local evolution

The microbiota of mammals is a product of coevolution. However, humans exhibit a range of adaptive peculiarities that can be quite geographically specific. The human microbiota also displays a variety of community compositions and a range of overlapping and redundant metabolic characteristics that can alter host physiology. For example, lactase persistence is a genetic characteristic of European populations, but in populations lacking the lactase gene, milk sugar digestion is endowed by the microbiota instead. Suzuki and Ley review the evidence for the role that the microbiota plays in local adaptation to new and changing human circumstances.

Science, this issue p. eaaz6827

When human populations expanded across the globe, they adapted genetically to local environments in response to novel selection pressures. Drivers of selection include exposure to new diets, climates, or pathogens. Humans harbor microbiotas that also respond to changes in local conditions and changes in their hosts. As a result, microbiotas may alter the adaptive landscape of the host through modification of the environment. Examples include changes to a foods nutritional value, the hosts tolerance to cold or low amounts of oxygen, or susceptibility to invading pathogens. By buffering or altering drivers of selection, the microbiota may change host phenotypes without coevolution between host and microbiota. Functions of the microbiota that are beneficial to the host may arise randomly or be acquired from the environment. These beneficial functions can be selected without the host exerting genetic control over them. Hosts may evolve the means to maintain beneficial microbes or to pass them to offspring, which will affect the heritability and transmission modes of these microbes. Examples in humans include the digestion of lactose via lactase activity (encoded by the LCT gene region) in adults and the digestion of starch by salivary amylase (encoded by the AMY1 gene)both are adaptations resulting from shifts in diet. The allelic variation of these genes also predicts compositional and functional variation of the gut microbiota. Such feedback between host alleles and microbiota function has the potential to influence variation in the same adaptive trait in the host. How the microbiota modifies host genetic adaptation remains to be fully explored.

In this paper, we review examples of human adaptations to new environments that indicate an interplay between host genes and the microbiota, and we examine in detail the LCTBifidobacterium and the AMY1Ruminococcus interactions. In these examples, the adaptive host allele and adaptive microbial functions are linked. We propose host mechanisms that can replace or recruit beneficial microbiota functions during local adaptation. Finally, we search for additional examples where microbiotas are implicated in human genetic adaptations, in which the genetic basis of adaptation is well described. These range from dietary adaptations, where host and microbial enzymes can metabolize the same dietary components (e.g., fatty acid and alcohol metabolism), through climate-related adaptations, where host and microbes can induce the same physiological pathway (e.g., cold-induced thermogenesis, skin pigmentation, and blood pressure regulation), to adaptations where hosts and microbes defend against the same local pathogens (e.g., resistance to malaria, cholera, and others). These examples suggest that microbiota has the potential to affect host evolution by modifying the adaptive landscape without requiring coevolution.

Well-studied examples of local adaptation across diverse host species can be revisited to elucidate previously unappreciated roles for the microbiota in host-adaptive evolution. In the context of human adaptation, knowledge of microbial functions and host genemicrobe associations is heavily biased toward observations made in Western populations, as these have been the most intensively studied to date. Testing many of the interactions proposed in this Review between host genes under selection and the microbiota will require a wider geographic scope of populations in their local contexts. Because genes under strong selection in humans are often involved in metabolic and other disorders and can vary between populations, future investigations of host genemicrobe interactions that relate to human adaptation may contribute to a deeper understanding of microbiota-related diseases in specific populations. Investigating host genemicrobe interactions in a wider variety of human populations will also help researchers go beyond collections of anecdotes to form the basis of a theory that takes microbial contributions to host adaptation into account in a formal framework. A better understanding of reciprocal interactions between the host genome and microbiota in the context of adaptive evolution will add another dimension to our understanding of human evolution as we moved with our microbes through time and space.

When human populations adapt genetically to new environments, their microbiotas may also participate in the process. Microbes can evolve faster than their host, which allows them to respond quickly to environmental change. They also filter the hosts environment, thereby altering selective pressures on the host. Illustrated here are examples of interactions between adaptive host alleles and adaptive microbiota functions where the microbiota likely modified the adaptive landscape in response to changes in diet (e.g., changes in levels of starch and milk consumption), exposure to local pathogens (e.g., malaria parasites and Plasmodium spp.), and changes in local climate (e.g., cold stress and hypoxia). In this paper, we discuss the resulting relationships between host-adaptive alleles and microbiota functions.

As human populations spread across the world, they adapted genetically to local conditions. So too did the resident microorganism communities that everyone carries with them. However, the collective influence of the diverse and dynamic community of resident microbes on host evolution is poorly understood. The taxonomic composition of the microbiota varies among individuals and displays a range of sometimes redundant functions that modify the physicochemical environment of the host and may alter selection pressures. Here we review known human traits and genes for which the microbiota may have contributed or responded to changes in host diet, climate, or pathogen exposure. Integrating hostmicrobiota interactions in human adaptation could offer new approaches to improve our understanding of human health and evolution.

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Teach Me in 10 Why COVID-19 Genetics Research May Be Biased With Dr Thomas Stoeger – Technology Networks

December 4th, 2020 12:31 am

When applying genetics to the study of COVID-19, scientists are learning a lot. Our DNA codes for proteins, some of which are required for SARS-CoV-2 to interact with and infect a host cell, others that are implicated in the downstream effects of viral infection, such as inflammatory responses. But how do scientists choose which genes to study?A new study by Dr Thomas Stoeger, a postdoc at North Western University, suggests there is a historical bias involved; scientists are studying human genes that have already been heavily investigated, independent of COVID-19.

In this installment of Teach Me in 10, Stoeger expands on the key points of this study and the implications of bias in scientific research.

Full research publication: Meta-Research: COVID-19 research risks ignoring important host genes due to pre-established research patterns.

For more Teach Me in 10 videos, check out our hub page.

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Researchers Sequence Genome of Tomato’s Wild Ancestor | Genetics – Sci-News.com

December 4th, 2020 12:31 am

Scientists at Boyce Thompson Institute have produced a high-quality chromosome-scale genome sequence for the currant tomato Solanum pimpinellifolium, the wild progenitor of the modern cultivated tomato Solanum lycopersicum.

Solanum pimpinellifolium in Botanisk tidsskrift, 1872.

Tomato is the worlds leading vegetable crop with a total production of 182 million tons and a worth over US $60 billion in 2018.

Solanum pimpinellifolium carrying red, small, and round fruits is the wild progenitor of the cultivated tomato.

It was domesticated in South America to give rise to Solanum lycopersicum var. cerasiforme, which was later improved into the big-fruited tomato Solanum lycopersicum var. lycopersicum in Mesoamerica.

Although other groups had previously sequenced Solanum pimpinellifolium, the new reference genome is more complete and accurate, thanks in part to cutting-edge sequencing technologies that are able to read very long pieces of DNA, said co-lead author Dr. Zhangjun Fei, a researcher at Boyce Thompson Institute and Robert W. Holley Center for Agriculture and Health at the U.S. Department of Agricultures Agricultural Research Service.

Older sequencing technologies that read short pieces of DNA can identify mutations at the single-base level, said co-lead author Dr. Shan Wu, a postdoctoral scientist at Boyce Thompson Institute.

But they arent good at finding structural variants, like insertions, deletions, inversions or duplications of large chunks of DNA.

Many known traits of the tomato are caused by structural variants, so that is why we focused on them, Dr. Fei said.

Structural variants also are understudied because they are more difficult to identify.

The scientists compared their reference genome of Solanum pimpinellifolium to that of the cultivated tomato, called Heinz 1706, and found more than 92,000 structural genetic variants.

They then combed the tomato pan-genome, a database with the genomes of more than 725 cultivated and closely related wild tomatoes, and discovered structural variants related to many important traits.

For example, the modern cultivated tomato has some genomic deletions that reduce their levels of lycopene, a red pigment with nutritional value, and an insertion that reduces their sucrose content.

Identification of the additional genetic diversity captured in the Solanum pimpinellifolium genome provides breeders with opportunities to bring some of these important features back to store-bought tomatoes, said co-author Dr. Jim Giovannoni, a researcher at Boyce Thompson Institute and Robert W. Holley Center for Agriculture and Health at the U.S. Department of Agricultures Agricultural Research Service.

The authors found many other structural variants that could be of interest to plant breeders, including variants in numerous disease-resistance genes and in genes involved in fruit size, ripening, hormonal regulation, metabolism, and the development of flowers, seeds and leaves.

They also found structural variants associated with regulating the expression of genes involved in the biosynthesis of lipids in fruit skin, which could help improve the fruits post-harvest performance.

So much genetic diversity was lost during tomato domestication, Dr. Fei said.

These data could help bring some of that diversity back and result in tomatoes that taste better, are more nutritious and more resilient.

The results appear in the journal Nature Communications.

_____

X. Wang et al. 2020. Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding. Nat Commun 11, 5817; doi: 10.1038/s41467-020-19682-0

This article is based on a press-release provided by Boyce Thompson Institute.

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An experimental gene therapy may be effective for MND patients with a newly discovered genetic mutation – BioPharma-Reporter.com

December 4th, 2020 12:31 am

Researchers based at the Neuroscience Institute at the University of Sheffield in the UK have identified a new genetic risk factor for Motor Neurone Disease (MND) in so-called 'junk DNA'.

The newly discovered genetic changes are present in up to 1% of MND patients.

The research, published in the journal Cell Reports, focused on genetic mutations in non-coding DNA, often known as junk DNA because it does not directly encode protein sequences. Non-coding DNA makes up more than 99% of the human genome, but currently is relatively unexplored.This research also includes new methods for studying mutations in non-coding DNA which could be applied to other diseases.

The authors of the study reported that they determined an existing neuroprotective drug developed at the University of California San Diego (UCSD) called SynCav1 could help MND patients carrying the newly discovered genetic mutation.

An experimental gene therapy for the treatment of neurological disorders such as MND and Alzheimers disease, SynCav1 has been licensed to CavoGene LifeSciences.

MND or Amyotrophic Lateral Sclerosis (ALS), as it is also known, affects motor neurons in the brain and spinal cord that form the connection between the nervous system and muscles to enable movement of the body. The progressive disease affects a patient's ability to walk, talk, use their arms and hands, eat and breathe.

Around 5,000 people in the UK and 30,000 people in the US are currently living with MND, with numbers expected to rise.

High-income countries currently have the highest rates of motor neuron diseases worldwide, and the burden is increasing with the ageing population, shows an analysis of the Global Burden of Diseases, Injuries, and Risk Factors Study (GBD) 2016.

Dr Jonathan Cooper-Knock, lead author of the study and NIHR clinical lecturer in Neurology at the Neuroscience Institute at the University of Sheffield, said: "Until now scientists have never systematically examined non-coding or junk DNA in relation to the development of MND.

"Not only have we identified a mutation in junk DNA which puts people at risk of developing a certain form of the MND, but we have also found that by targeting the mutated gene with the established neuroprotective drug called SynCav1, it might be possible to halt or potentially prevent the disease progressing in those patients.

"This is a significant breakthrough in terms of genetic risk factors driving personalized medicine for MND patients."

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Rare genetic differences play vital role in blood pressure – British Heart Foundation

December 4th, 2020 12:31 am

New genetic differences have been discovered to play a vital role in regulating blood pressure, according to research part funded by us and published in Nature Genetics.

Researchers based at the University of Cambridge and round the world studied the genetic make-up of 1.3 million people with diverse ancestries. They found 106 new regions of DNA and 87 new rare genetic variations associated with blood pressure.

The rare genetic variants had an eight times greater effect on blood pressure compared to more common variants. Thirty-two of the rare variants were located within newly identified sections of DNA linked to blood pressure, and 55 were located within genes already known to be associated with its regulation.

The importance of the work is illustrated by the finding that six of the genes identified in this study, four of which contain rare variants, are already drug targets for heart and circulatory conditions. This suggests that the other genes identified may also be good targets for developing new drugs.

The researchers therefore hope that these findings will lead to new ways to prevent and treat high blood pressure.

Professor Sir Nilesh Samani, our Medical Director, said:

This major study has revealed new underlying genetic factors which add to the blueprint of what dictates our blood pressure.

High blood pressure is a major risk factor for heart and circulatory diseases. These new discoveries should shed light on potential new ways to prevent and treat high blood pressure and ensure its in a healthy range, ultimately to reduce deadly heart attacks and strokes.

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Insights on Human Genetics Market 2020 to 2027: COVID-19 Impact Analysis, Drivers, Opportunity Analysis, Restraints, and Forecast – The Courier

December 4th, 2020 12:31 am

A new report added by Research Dive offers insights and puts forth the impact of COVID-19 catastrophe on the global human genetics market. According to the report, the human genetics market is estimated to grow at a significant rate and generate robust revenue share by 2027 during the forecast period from 2020 to 2027.

The report provides brief summary and an in-depth information of the market by collecting data from industry experts and different sources prevalent in the market. The statistics presented in the report are extensive, reliable, and the outcome of an exhaustive analytical research. The report offers qualitative and quantitative trend analysis for the period of 2020-2027 to assist stakeholders to understand the overall market scenario. Comprehensive analysis of the key segments validates the types of products used in the industry and their applications.

MARKET SEGMENTATION

On the basis of type, the global human genetics market is segmented into:

Product Type Segmentation Prenatal Genetics Cytogenetics Molecular Genetics & Symptom Genetics

For More Detail Insights, Download Sample Copy of the Report at: https://www.researchdive.com/request-toc-and-sample/2137

On the basis of application, the global human genetics market is segmented into:

Cytogenetics Molecular Genetics Prenatal Genetics Symptom Genetics Research Center Industry Segmentation Forensic Laboratories Hospital

On the basis of region, the global human genetics market is segmented into:

North America U.S. Canada Mexico

Europe Germany UK France Spain Italy Rest of Europe

Asia-Pacific Japan China India Australia South Korea Rest of Asia-Pacific

LAMEA Brazil Argentina Saudi Arabia South Africa UAE Rest of LAMEA

Connect with Our Analyst to Contextualize Our Insights for Your Business: https://www.researchdive.com/connect-to-analyst/2137

KEY COMPANIES COVERED

The research report summarizes and outlines several aspects of the key players operating in the global human genetics market such as company snapshot, business performance, product portfolio, recent developments & strategies, SWOT analysis, and many more. The key players listed are:

LGC Forensics Agilent Technologies QIAGEN N.V. Bode Technology Illumina Thermo Fisher Scientific Inc. Promega Corporation Orchid Cellmark Inc. NextOmics GE Healthcare Takara Bio Inc. Oxford Nanopore Pacific Biosciences

RECENT DEVELOPMENTS

The key players of the market are adopting several strategies to obtain a leading position in the global industry. For instance, in August 2020, Ancestry launched AncestryHealth, a product that features next-generation sequencing with an ability to screen the genes associated with blood disorders, breast cancer, colon cancer, and heart disease.

Contact Us:

Mr. Abhishek PaliwalResearch Dive30 Wall St. 8th Floor, New YorkNY 10005 (P)+ 91 (788) 802-9103 (India)+1 (917) 444-1262 (US) TollFree : +1 -888-961-4454Email:support@researchdive.comLinkedIn:https://www.linkedin.com/company/research-diveTwitter:https://twitter.com/ResearchDiveFacebook:https://www.facebook.com/Research-DiveBlog:https://www.researchdive.com/blogFollow us on:https://covid-19-market-insights.blogspot.com

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Genetic Technologies Secures US and ANZ Distribution Rights for PREDICTIX – BioSpace

December 4th, 2020 12:31 am

MELBOURNE, Australia, Dec. 02, 2020 (GLOBE NEWSWIRE) -- Molecular diagnostics company Genetic Technologies Ltd (ASX: GTG; NASDAQ: GENE, the Company), announced today that they have entered into a three-year partnership agreement with mental health company, Taliaz, for the distribution rights of their PREDICTIX products in Australia, New Zealand and the USA (Agreement).

Key Highlights

The Agreement will support GTG to expand its product offering and establish the mental health vertical by harnessing PREDICTIX, Taliazs pioneering decision-support and management platform to optimize patient treatment for mental health disorders. Starting in the field of depression, this genomic-based, Artificial Intelligence (AI) driven antidepressant selection technology, marks GTGs first foray into pharmacogenomics1.

George Muchnicki, GTGs Interim CEO stated: We are incredibly pleased to have partnered with Taliaz to bring their predictive and personalized mental health product to Australia and New Zealand. GTG are at the forefront of providing personalized and predictive products to empower patients to make informed decisions about their health. This distribution agreement is our first external product partnership and our first product within the mental health vertical. Mental health has remained at the forefront of media discussions and government initiatives within Australia, New Zealand and globally due to the ongoing social and economic impact and given the impact from the current global pandemic. We look forward to working closely with the Taliaz team to deliver their product into these markets at this critical time.

The execution of the Agreement is reliant on product regulatory clearance by the Therapeutic Goods Administration (TGA) in Australia and Food and Drug Administration (FDA) in the USA. Once cleared, GTG has committed to providing a minimum distribution of 8,000 tests over the initial three-year term with an associated minimum cost to GTG of $200,000 over the term, inclusive of licencing fees and a percentage based fee per test paid to Taliaz. Subject to the regulatory clearance process, GTG anticipates that PREDICTIX will be made available for sale and distribution in Australia and New Zealand in Q3 FY21 on GTGs existing Consumer Initiated Testing (CIT) platform, with end-customer pricing to be determined but anticipated to be in line with existing GTG product pricing.

PREDICTIX, developed by the private Israeli company, Taliaz, addresses the growing burden on society from depression, with 1 in 10 Americans2 and 1 in 8 Australians3 prescribed antidepressants per year. PREDICTIX enables a more accurate and rapid treatment plan for patients suffering from depression, reducingtreatment costs and the overall associated economic burden.

PREDICTIX is an algorithmic-based decision support tool that can improve todays antidepressant prescribing accuracy by 47%4. Combining DNA testing with AI, PREDICTIX empowers doctors to improve the assessment, treatment, and management of mental health disorders.

The PREDICTIX technology uses AI to analyse multiple data streams, including patients genomic, clinical history and demographic background, providing doctors with a personalized patient report. The report ranks the statistical efficacy and potential side effects of various antidepressant medication based on each patients genetic makeup andhealth record. This helps doctors optimize prescribing decisions for patients diagnosed with depressive disorder, where there is currently a long and painful trial and error period. PREDICTIX is CE-registered and commercially available in the UK, France and Israel, with the process underway for TGA approval.

Dekel Taliaz, CEO and Co-founder of Taliaz said, We are excited to partner with Genetic Technologies, world-leaders in the genetic risk assessment space. This new partnership will support rapid commercialization of PREDICTIX to help more depression sufferers in Australia, New Zealand and the USA, while adding a complementary and advanced mental health solution to GTGs growing suite of DNA tests.

The Agreement strengthens GTGs mission in creating a suite of tests to enable a holistic and predictive health assessment for patients, which can be adjusted to address the individual patient risks and needs. Establishing the first product within the mental health and pharmacogenetic space continues GTGs progress towards being able to offer a highly comprehensive suite of polygenic risk assessment tests via GTGs CIT platform and additional sales and marketing avenues as these are progressed.

This announcement was approved by the Board of Directors of Genetic Technologies Limited.

About Genetic Technologies Limited

Genetic Technologies Limited (ASX: GTG; Nasdaq: GENE) is a diversified molecular diagnostics company. GTG offers cancer predictive testing and assessment tools to help physicians proactively manage patient health. The Companys lead products GeneType for Breast Cancer for non-hereditary breast cancer and GeneType for Colorectal Cancer are clinically validated risk assessment tests and are first in class. Genetic Technologies is developing a pipeline of risk assessment products.

For more information, please visit http://www.gtglabs.com

About Taliaz

Taliaz is revolutionizing the treatment and management of mental health disorders with PREDICTIX. PREDICTIX is a CE-registered product that provides an advanced decision support software for psychiatrists and general practitioners. Harnessing artificial intelligence, PREDICTIX can enable easy, effective and rapid patient assessment, improved prescribing precision and management for a wide range of mental health conditions. Starting in the field of depression, the PREDICTIX Genetics and PREDICTIX Digital products can improve todays prescribing accuracy by up to 47%4.

For more information, please visit predictix.ai.

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Are Consumers Getting What They Think They Are with Genetic Testing? – YubaNet

December 4th, 2020 12:31 am

Washington, D.C. November 30, 2020 Today Consumer Federation of America released a new report,Marketing Direct-to-Consumer Genetic Testing: Are Consumers Getting What They Think They Are?It examines the claims direct-to-consumer (DTC) genetic testing companies make for these services, the information they provide to consumers about them, the variance of results from one company to another, the up-selling that occurs, and the companies terms of service and privacy policies. With the holidays coming up and DTC genetic testing companies promoting their services as the perfect gift, we wanted to help educate consumers about the benefits, limitations, and risks of these tests, said report author, Susan Grant, CFAs Director of Consumer Protection and Privacy. Nick Roper, Administrative and Advocacy Associate at CFA, assisted her with the research.

Conducted with a grant from the Rose Foundation, the study focused on six companies: 23andMe, Ancestry, FamilyTreeDNA, HomeDNA, LivingDNA, and MyHeritage. In order to compare the results, CFAs Grant took the basic ancestry tests from each company. We found that theres much about these tests consumers may not realize, said Grant. They need to be better informed and better protected.

What the CFA Study Found

Consumers might be surprised to know that most DTC genetic tests are not reviewed by the government before theyre marketed to confirm the claims made for them, their accuracy, or their validity, said Grant. There is a lot of helpful information on DTC genetic testing companies websites about genetics and how their services work, but were concerned that not many consumers will delve into it and assume theyll get more detailed and conclusive results than they actually will.

Recommendations

On the basis of the study, CFA made these recommendations:

DTC genetic testing companies should refrain from making specific accuracy claims.

In conjunction with the report, CFA released tips for consumers,9 Questions and Answers about DTC Genetic Testing.The full report ishere. A shorter version of the report is availablehere.

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Cranky camels make difficult dairy cows part two but technology and genetics are making some headway – Brooks Bulletin

December 4th, 2020 12:31 am

Most camels and their cousins, alpacas and llamas, have a reputation for being somewhat irritable and belligerent; thats backed up with occasional bouts of spitting, biting and cantankerous behaviour. They have been domesticated for a few thousand years, but they still seem to have a lofty sense of dignity despite humans trying to break their spirit. The noble camel has endured being a beast of burden and even a racing animal. But becoming a dairy animal is a work in progress as patient folks who handle them have found out since they were first tamed. Humans have milked or tried to milk camels for thousands of years; the milk is particularly nutritious and a protein source in many middle east and African societies to this day. The fact that massive camel dairy operations have sprung up would indicate that camel milk is still popular within the middle easts urbanized community and has a growing interest in other parts of the world. Camel dairy operations have started up in the USA and Australia to supply new markets, but they are modest in size. The biggest hurdle is trying to turn the camel into an efficient dairy animal with ever-increasing regular milk production assisted by mechanical handling. Thats a description of the typical bovine dairy animal of today.From a dairy perspective, the camel cow is genetically 200 years behind the average bovine dairy cow. The camel is nowhere near as docile, cooperative, nor as remotely productive as a modern dairy cow. Thats the result of longtime intensive selection as none of the other milked species started out as happy, productive dairy animals. However, modern Western-style camel dairy operations are making progress through a genetic selection process, camel training and unique camel milking and handling equipment. Some of the large middle east camel dairy operations employ highly skilled professionals that guide production increases.Interestingly, a small tribal group in Northern Kenya who are highly dependent on camel milk has, through selection, created a higher milk yielding strain of camel, so it can be done. The one fast-track system to a better milking camel cow is through mass selection. In the middle east and Australia, they have access to literally hundreds of thousands of local camel cows, both wild and captive. That enables them through a process of elimination to find the one cow in a hundred that might make a good docile camel dairy cow for a commercial dairy operation. However, selection would seem to be the easy part; its the milking part where it gets more complicated. Unlike other milking species like goats, sheep and bovines, the camel does not easily let down its milk; it needs significant stimulation and then only produces at intervals. In traditional settings, the presence of a camel cows calf provides the stimulation, and a person then hand milks the cow. Considering the camels cranky nature, that alone would seem to be a dangerous and haphazard process, never mind the food safety and sanitation concerns. Clearly, that wont work in a commercial dairy operation where thousands of camels have to be milked twice a day. Hence the big sophisticated operators in the middle east have developed protocols and equipment that eliminates most calf stimulation. Still, they must be using some sort of method to keep milk production up on a regular and consistent basis. All of that would seem to be transferable to a potentially large operation in Alberta, but a reliable source of camels would be needed. The other part is the huge capital investment, one of the largest middle east dairies started with an investment of $20 million and now has over 500 employees. Granted, this large operator controls camel milk from production to processing to worldwide marketing. It must be profitable as these large operations continue to expand in the middle east. A substantial commercial camel dairy operation in North America would have some advantages. Firstly, there is seemingly a large local market to absorb camel milk. Secondly is camel feed. The big outfits in the middle east import large quantities of costly alfalfa hay and other feedstuffs from Australia and North America to provide consistent quality feed to produce a steady supply of milk. Mammals, in general, produce surplus milk only through excess fat and protein consumption. But feed and markets arent enough of an advantage its finding enough of those darned cranky camel cows to milk. More next time. Will Verboven is an ag opinion writer and ag policy advisor.

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Last surviving white giraffe, a genetic anomaly, fitted with GPS tracker to deter poachers – Genetic Literacy Project

December 4th, 2020 12:31 am

The unique male [white] giraffe now stands aloneafter a female and her calf were killed by poachers in March.

[A] GPS tracking device, secured to one of the animals horns, will give hourly updates of his location, said the Ishaqbini Hirola Community Conservancy in a press release on [November 17].

Rangers will be able to monitor the giraffes movements in the conservancy located in Garissa County, eastern Kenya.

The giraffes grazing range has been blessed with good rains in the recent past and the abundant vegetation bodes well for the future of the white male, said Ahmed Noor, manager of the Ishaqbini Hirola Community Conservancy.

Noor thanked the Kenya Wildlife Service, Save Giraffes Now and the Northern Rangelands Trust (NRT) for their help in safeguarding wildlife species.

Our mission is to work with communities, enable them [to] be resilient, secure their livelihoods as well as protect the unique wildlife like the only known white giraffe, said Antony Wandera, senior wildlife monitoring officer at the NRT.

The male giraffe has a rare genetic trait called leucism, which results in the partial loss of pigmentation in an animal and makes it easy to spot for poachers on the arid savannah.

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Last surviving white giraffe, a genetic anomaly, fitted with GPS tracker to deter poachers - Genetic Literacy Project

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Postgraduate Research Scholarship in Law and Genetics – News – The University of Sydney

December 4th, 2020 12:31 am

1. Background

a. This Scholarship has been established to provide financial assistance to a PhD student who is undertaking research in law and genetics.

b. This Scholarship is funded by an Australian Research Council (ARC) research project.

a. The Scholarship is offered subject to the applicant having an unconditional offer of admission or being currently enrolled to study full-time in a PhD within the University of Sydney Law School.

b. Applicants must be willing to conduct research in law and genetics.

c. Applicants must hold an Honours degree (first class or second upper) or equivalent in Law.

d. Applicants must have previous research experience in Law.

a. The successful applicant will be awarded the Scholarship on the basis of:

I. academic merit,

II. area of study and/or research proposal,

III. curriculum vitae,

IV. a personal statement which demonstrates their interest in law and genetics

V. and previous research achievements, and

VI. previous research experience.

b. The successful applicant will be awarded the Scholarship on the nomination of the Sydney Law School Associate Dean (Research Education) and the relevant research supervisor(s), or their nominated delegate(s).

a. The Scholarship will provide a stipend allowance of $26,300 per annum for up to three years, subject to satisfactory academic performance.

b. The recipient may apply for an extension of the stipend allowance for up to six months.

c. Periods of study already undertaken towards the degree prior to the commencement of the Scholarship will be deducted from the maximum duration of the Scholarship excluding the potential extension period.

d. The Scholarship is for commencement in the relevant research period in which it is offered and cannot be deferred or transferred to another area of research without prior approval.

e. No other amount is payable.

f. The Scholarship and any potential extension period will be offered subject to ARC approval and the availability of funding.

a. Progression is subject to passing the annual progress review.

a. The Scholarship recipient receives up to 20 working days recreation leave each year of the Scholarship and this may be accrued. However, the student will forfeit any unused leave remaining when the Scholarship is terminated or complete. Recreation leave does not attract a leave loading and the supervisor's agreement must be obtained before leave is taken.

b. The Scholarship recipient may take up to 10 working days sick leave each year of the Scholarship and this may be accrued over the tenure of the Scholarship. Students with family responsibilities, caring for sick children or relatives, or experiencing domestic violence, may convert up to five days of their annual sick leave entitlement to carers leave on presentation of medical certificate(s). Students taking sick leave must inform their supervisor as soon as practicable.

a. The Scholarship recipient may not normally conduct research overseas within the first six months of award.

b. The Scholarship holder may conduct up to 12 months of their research outside Australia. Approval must be sought from the student's supervisor and the Sydney Law School Associate Dean (Research Education) via application to the Higher Degree by Research Administration Centre (HDRAC), and will only be granted if the research is essential for completion of the degree. All periods of overseas research are cumulative and will be counted towards a student's candidature. Students must remain enrolled full-time at the University and receive approval to count time away.

a. The Scholarship recipient cannot suspend their award within their first six months of study, unless a legislative provision applies.

b. The Scholarship recipient may apply for up to 12 months suspension of the Scholarship for any reason during the tenure of the Scholarship. Periods of Scholarship suspension are cumulative and failure to resume study after suspension will result in the award being terminated. Approval must be sought from the student's supervisor and the Sydney Law School Associate Dean (Research Education) via application to the Higher Degree by Research Administration Centre (HDRAC). Periods of study towards the degree during suspension of the Scholarship will be deducted from the maximum tenure of the Scholarship.

a. The Scholarship recipient must notify HDRAC, and their supervisor promptly of any planned changes to their enrolment including but not limited to: attendance pattern, suspension, leave of absence, withdrawal, course transfer, and candidature upgrade or downgrade. If the award holder does not provide notice of the changes identified above, the University may require repayment of any overpaid stipend.

a. The Scholarship will be terminated:

I. on resignation or withdrawal of the recipient from their research degree,

II. upon submission of the thesis or at the end of the award,

III. if the recipient ceases to be a full-time student and prior approval has not been obtained to hold the Scholarship on a part-time basis,

IV. upon the recipient having completed the maximum candidature for their degree as per the University of Sydney (Higher Degree by Research) Rule 2011 Policy,

V. if the recipient receives an alternative primary stipend scholarship. In such circumstances this Scholarship will be terminated in favour of the alternative stipend scholarship where it is of higher value,

VI. if the recipient does not resume study at the end of a period of approved leave, or

VII. If the recipient ceases to meet the eligibility requirements specified for this Scholarship, (other than during a period in which the Scholarship has been suspended or during a period of approved leave).

b. The Scholarship may also be terminated by the University before this time if, in the opinion of the University:

I. the course of study is not being carried out with competence and diligence or in accordance with the terms of this offer,

II. the student fails to maintain satisfactory progress, or

III. the student has committed misconduct or other inappropriate conduct.

c. The Scholarship will be suspended throughout the duration of any enquiry/appeal process.

d. Once the Scholarship has been terminated, it will not be reinstated unless due to University error.

a. Where during the Scholarship a student engages in misconduct, or other inappropriate conduct (either during the Scholarship or in connection with the students application and eligibility for the Scholarship), which in the opinion of the University warrants recovery of funds provided, the University may require the student to repay payments made in connection with the Scholarship. Examples of such conduct include and without limitation; academic dishonesty, research misconduct within the meaning of the Research Code of Conduct (for example, plagiarism in proposing, carrying out or reporting the results of research, or failure to declare or manage a serious conflict of interests), breach of the Code of Conduct for Students and misrepresentation in the application materials or other documentation associated with the Scholarship.

b. The University may require such repayment at any time during or after the Scholarship period. In addition, by accepting this Scholarship, the student consents to all aspects of any investigation into misconduct in connection with this Scholarship being disclosed by the University to the funding body and/or any relevant professional body.

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Postgraduate Research Scholarship in Law and Genetics - News - The University of Sydney

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