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How Long Will I Live? – Life Expectancy Calculator

October 23rd, 2015 7:47 pm

We have been working to update the interface of the tool and integrate the latest available data into our calculations. Shortly, this version of the calculator will be replaced. The beta version of the updated calculator is available here. Feedback? Fill out this quick survey to let us know. Fill in the following form then click the button labeled "Calculate Life Expectancy". For values which you are unsure of, leave it blank or choose option 'don't know'; For zero values, enter "0", DO NOT leave them blank If you're in a hurry, try our Short life expectancy calculator.

I am year old male female white nonwhite My height is inches (NOTE!!! Only input inches: Eg. 5'8" = 68 inches) My weight is pounds I expect to have less than 10 10 to 11 more than 11 don't know years of education My family's total income for the past 12 months is dollars I expect that for most of my life I will be married not married don't know Compared to other people of the same age and sex as me, I am in the 1st (least fit) 2nd 3rd 4th 5th (fittest) don't know quintile of fitness(refer to Fitness Table) I do not do don't know have at least one first degree relative (parents, sibling, children) who has a history of heart diseases I do not do don't know have at least one first degree relative (parents, sibling, children) who has a history of prostate cancer I do not do don't know have at least one first degree relative (parents, sibling, children) who has a history of breast cancer I do not do don't know have at least one first degree relative (parents, sibling, children) who has a history of colorectal cancer I do not do don't know have at least one first degree relative (parents, sibling, children) who has a history of stomach cancer I do not do don't know have at least one first degree relative (parents, sibling, children) who has a history of lung cancer None One Two or more don't know of my first degree relative (parents, sibling, children) has a history of diabetes I do not do don't know have at least one first degree relative (parents, sibling, children) who has a history of stroke I reside in Alabama Alaska Arizona Arkansas California Colorado Connecticut Delaware District of Columbia Florida Georgia Hawaii Idaho Illnois Indiana Iowa Kansas Kentucky Louisiana Maine Maryland Massachusetts Michigan Minnesota Mississippi Missouri Montana Nebraska Nevada New Hampshire New Jersey New Mexico New York North Carolina North Dakota Ohio Oklahoma Oregon Pennsylvania Rhode Island South Carolina South Dakota Tennessee Texas Utah Vermont Virginia Washington West Virginia Wisconsin Wyoming don't know I have not have don't know been diagnosed with asthma I have not have don't know been diagnosed with diabetes My diastolic blood pressure (the smaller/bottom number- an average adult's is about 80) is mmHg

I smoke cigarettes per day My spouse smokes cigarettes per day I have 0 or negligible less than 1 1 2 to 3 4 or more don't know drinks per day I travel thousand miles per year in an automobile The driver of the automobile which I most frequently travel in is a male female don't know The age of the driver of the automobile which I most frequently travel in is years I do not do don't know regularly wear seat belts when travelling in a automobile The automobile which I most frequently travel in does not does don't know regularly keep to speeds appropriate to road conditions The driver of the automobile which I most frequently travel in is sometimes never don't know drunk while driving Of the 10 things listed in the Stress List, of them happened to me in the past 12 months I am a sedentary person occasional exerciser conditioning exerciser don't know I work in the mining construction transportation/public utilities agriculture/forestry/fishing public administration manufacturing retail trade services wholesale trade finance/real estate all others don't know industry My father worked in a non-manual manual don't know job My first regular occupation is a non-manual manual don't know job My current occupation is a non-manual manual don't know job Of the 5 types of food in the Dietary Diversity List, on average I consume types more less don't know than 10% of my energy intake comes from fat I am not am don't know among the 15% most depressed of the population I have had sexual partners in the past 12 months For most of my sexual encounters, I do not do don't know use condoms On average, I have hours of sleep a day

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Immune system – New World Encyclopedia

October 23rd, 2015 7:46 pm

The immune system is the system of specialized cells and organs that protects an organism from outside biological influences (though in a broad sense, almost every organ has a protective functionfor example, the tight seal of the skin or the acidic environment of the stomach).

When the immune system is functioning properly, it protects the body against bacteria and viral infections and destroys cancer cells and foreign substances. If the immune system weakens, its ability to defend the body also weakens, allowing pathogens (infectious agents), including viruses that cause common colds and flu, to survive and flourish in the body. Because the immune system also performs surveillance of tumor cells, immune suppression has been reported to increase the risk of certain types of cancer.

The complex coordination of the immune system is stunning. It is capable of recognizing millions of invaders and neutralizing their attacks, and yet at the same time it allows helpful, symbiotic bacteria, such as E. coli, to become established within the human body. From the time of the initial invasion of a foreign element until its removal, the entire immune systemincluding diverse types of white blood cells, each with a different responsibilityharmoniously functions together in recognizing, attacking, and destroying substances identified as foreign.

The immune system is often divided into two sections:

Another way of categorizing this is "nonspecific defenses" (skin, mucous membranes, phagocytes, fever, interferons, cilia, and stomach acid) and "specific defenses" (the cell-mediated and the humoral systems, both of which attack specific pathogens).

The adaptive immune system, also called the "acquired immune system, and "specific immune system," ensures that animals that survive an initial infection by a pathogen are generally immune to further illness caused by that same pathogen. The adaptive immune system is based on dedicated immune cells termed leukocytes (white blood cells).

The basis of specific immunity lies in the capacity of immune cells to distinguish between proteins produced by the body's own cells ("self" antigenthose of the original organism), and proteins produced by invaders or cells under control of a virus ("non-self" antigenor, what is not recognized as the original organism). This distinction is made via T-Cell Receptors (TCR) or B-Cell Receptors (BCR). For these receptors to be efficient they must be produced in thousands of configurations; this way they are able to distinguish between many different invader proteins.

This immense diversity of receptors would not fit in the genome of a cell, and millions of genes, one for each type of possible receptor, would be impractical. Instead, there are a few families of genes, each one having a slightly different modification. Through a special process, unique to cells of jawed vertebrates (Gnathostomata), the genes in these T-cell and B-cell lymphocytes recombine, one from each family, arbitrarily into a single gene.

This way, for example, each antibody or BCR of B lymphocytes has six portions, and is created from two genes unique to this lymphocyte, created by the recombination (union) of a random gene from each family. If there are 6 families, with 50, 30, 9, 40, and 5 members, the total possible number of antibodies is 50x30x6x9x40x5 = 16 million. On top of this there are other complex processes that increase the diversity of BCR or TCR even more, by mutation of the genes in question. The variability of antibodies is practically limitless, and the immune system creates antibodies for any molecule, even artificial molecules that do not exist in nature.

Many TCR and BCR created this way will react with their own peptides. One of the functions of the thymus and bone marrow is to hold young lymphocytes until it is possible to determine which ones react to molecules of the organism itself. This is done by specialized cells in these organs that present the young lymphocytes with molecules produced by them (and effectively the body). All the lymphocytes that react to them are destroyed, and only those that show themselves to be indifferent to the body are released into the bloodstream.

The lymphocytes that do not react to the body number in the millions, each with millions of possible configurations of receptors, each with a receptor for different parts of each microbial protein possible. The vast majority of lymphocytes never find a protein that its receptor is specified for, those few that do find one are stimulated to reproduce. Effective cells are generated with the specific receptor and memory cells. These memory cells are quiescent, they have long lives and are capable of identifying this antigen some time later, multiplying themselves quickly and rapidly responding to future infections.

In many species, the adaptive immune system can be divided into two major sections, the humoral immune system and the cell-mediated immune system.

The humoral immune system acts against bacteria and viruses in the body liquids (e.g., blood) by means of proteins, called immunoglobulins (also known as antibodies), which are produced by B cells. B cells are lymphocytes, with the "B" standing for the bursa of Fabricius, an organ unique to birds, where avian B cells mature. (It does not stand for bone marrow, where B cells are produced in all other vertebrates except for rabbits. B cells were original observed in studies done on immunity in chickens.)

Secreted antibodies bind to antigens on the surfaces of invading microbes (such as viruses or bacteria), which flags them for destruction. An antigen is any substance that causes the immune system to produce antibodies.

Humoral immunity refers to antibody production and all the accessory processes that accompany it: Th2 (T-helper 2 cells) activation and cytokine production (cytokines are proteins that affect the interaction between cells); germinal center formation and isotype switching (switching a specific region of the antibody); and affinity maturation and memory cell generation (memory cell generation has to do with the ability for a body to "remember" a pathogen by producing antibodies specifically targeted for it). Humoral immunity also refers to the effector functions of antibodies, which include pathogen and toxin neutralization, classical complement activation, and opsonin promotion of phagocytosis and pathogen elimination.

The human body has the ability to form millions of different types of B cells each day, and each type has a unique receptor protein, referred to as the B cell receptor (BCR), on its membrane that will bind to one particular antigen. At any one time in the human body there are B cells circulating in the blood and lymph, but are not producing antibodies. Once a B cell encounters its cognate antigen and receives an additional signal from a helper T cell, it can further differentiate into one of two types of B cells.

B cells need two signals to initiate activation. Most antigens are T-dependent, meaning T cell help is required for maximum antibody production. With a T-dependent antigen, the first signal comes from antigen cross linking BCR (B cell receptor) and the second from the Th2 cell. T-dependent antigens present peptides on B cell Class II MHC proteins to Th2 cells. This triggers B cell proliferation and differentiation into plasma cells. Isotype switching to IgG, IgA, and IgE and memory cell generation occur in response to T-dependent antigens.

Some antigens are T-independent, meaning they can deliver both the antigen and the second signal to the B cell. Mice without a thymus (nude or athymic mice) can respond to T-independent antigens. Many bacteria have repeating carbohydrate epitopes that stimulate B cells to respond with IgM synthesis in the absence of T cell help.

T-dependent responses require that B cells and their Th2 cells respond to epitopes on the same antigen. T and B cell epitopes are not necessarily identical. (Once virus-infected cells have been killed and unassembled virus proteins released, B cells specific for internal proteins can also be activated to make opsonizing antibodies to those proteins.) Attaching a carbohydrate to a protein can convert the carbohydrate into a T-dependent antigen; the carbohydrate-specific B cell internalizes the complex and presents peptides to Th2 cells, which in turn activate the B cell to make antibodies specific for the carbohydrate.

An antibody is a large Y-shaped protein used to identify and neutralize foreign objects like bacteria and viruses. Production of antibodies and associated processes constitutes the humoral immune system. Each antibody recognizes a specific antigen unique to its target. This is because at the two tips of its "Y," it has structures akin to locks. Every lock only has one key, in this case, its own antigen. When the key is inserted into the lock, the antibody activates, tagging or neutralizing its target. The production of antibodies is the main function of the humoral immune system.

Immunoglobulins are glycoproteins in the immunoglobulin superfamily that function as antibodies. The terms antibody and immunoglobulin are often used interchangeably. They are found in the blood and tissue fluids, as well as many secretions. In structure, they are globulins (in the -region of protein electrophoresis). They are synthesized and secreted by plasma cells that are derived from the B cells of the immune system. B cells are activated upon binding to their specific antigen and differentiate into plasma cells. In some cases, the interaction of the B cell with a T helper cell is also necessary.

In humans, there are five types: IgA, IgD, IgE, IgG, and IgM. (Ig stands for immunoglobulin.). This is according to differences in their heavy chain constant domains. (The isotypes are also defined with light chains, but they do not define classes, so they are often neglected.) Other immune cells partner with antibodies to eliminate pathogens depending on which IgG, IgA, IgM, IgD, and IgE constant binding domain receptors it can express on its surface.

The antibodies that a single B lymphocyte produces can differ in their heavy chain, and the B cell often expresses different classes of antibodies at the same time. However, they are identical in their specificity for antigen, conferred by their variable region. To achieve the large number of specificities the body needs to protect itself against many different foreign antigens, it must produce millions of B lymphoyctes. In order to produce such a diversity of antigen binding sites for each possible antigen, the immune system would require many more genes than exist in the genome. It was Susumu Tonegawa who showed in 1976 that portions of the genome in B lymphocytes can recombine to form all the variation seen in the antibodies and more. Tonegawa won the Nobel Prize in Physiology or Medicine in 1987 for his discovery.

The cell-mediated immune system, the second main mechanism of the adaptive immune system, destroys virus-infected cells (among other duties) with T cells, also called "T lymphocytes." ("T" stands for thymus, where their final stage of development occurs.)

Cell-mediated immunity is an immune response that does not involve antibodies but rather involves the activation of macrophages and natural killer cells, the production of antigen-specific cytotoxic T-lymphocytes, and the release of various cytokines in response to an antigen. Cellular immunity protects the body by:

Cell-mediated immunity is directed primarily at microbes that survive in phagocytes and microbes that infect non-phagocytic cells. It is most effective in removing virus-infected cells, but also participates in defending against fungi, protozoans, cancers, and intracellular bacteria. It also plays a major role in transplant rejection.

There are two major types of T cells:

In addition, there are regulatory T cells (Treg cells) which are important in regulating cell-mediated immunity.

The adaptive immune system could take days or weeks after an initial infection to have an effect. However, most organisms are under constant assault from pathogens that must be kept in check by the faster-acting innate immune system. Innate immunity, or non-specific defense, defends against pathogens by rapid responses coordinated through chemical or physical barriers or "innate" receptors that recognize a wide spectrum of conserved pathogenic components.

In evolutionary time, it appears that the adaptive immune system developed abruptly in jawed fish. Prior to jawed fish, there is no evidence of adaptive immunity, and animals therefore relied only on their innate immunity. Plants, on the other hand, rely on secondary metabolites (chemical compounds in organisms that are not directly involved in the normal growth, development, or reproduction of organisms) to defend themselves against fungal and viral pathogens as well as insect herbivory. Plant secondary metabolites are derived through vast arrays of plant biosynthetic pathways not needed directly for plant survival, hence why they are named secondary. Plant secondary metabolism should not be confused with innate or adaptive immunity as they evolved along an entirely different evolutionary lineages and rely on entirely different signal cues, pathways, and responses.

The innate immune system, when activated, has a wide array of effector cells and mechanisms. There are several different types of phagocytic cells, which ingest and destroy invading pathogens. The most common phagocytes are neutrophils, macrophages, and dendritic cells. Another cell type, natural killer cells, are especially adept at destroying cells infected with viruses. Another component of the innate immune system is known as the complement system. Complement proteins are normally inactive components of the blood. However, when activated by the recognition of a pathogen or antibody, the various proteins recruit inflammatory cells, coat pathogens to make them more easily phagocytosed, and make destructive pores in the surfaces of pathogens.

The first-line defense includes barriers to infection, such as skin, the mucous coating of the gut, and airways. These physically prevent the interaction between the host and the pathogen. Pathogens that penetrate these barriers encounter constitutively expressed (constantly expressed) anti-microbial molecules (e.g., lysozymes) that restrict the infection.

In addition to the usual defense, the stomach secretes gastric acid, which, in addition to aiding digestive enzymes in the stomach to work on food, prevents bacterial colonization by most pathogens.

The second-line defense includes phagocytic cells (macrophages and neutrophil granulocytes) that can engulf (phagocytose) foreign substances. Macrophages are thought to mature continuously from circulating monocytes.

Phagocytosis involves chemotaxis, where phagocytic cells are attracted to microorganisms by means of chemotactic chemicals such as microbial products, complement, damaged cells, and white blood cell fragments. Chemotaxis is followed by adhesion, where the phagocyte sticks to the microorganism. Adhesion is enhanced by opsonization, where proteins like opsonins are coated on the surface of the bacterium. This is followed by ingestion, in which the phagocyte extends projections, forming pseudopods that engulf the foreign organism. Finally, the bacterium is digested by the enzymes in the lysosome, exposing it to reactive oxygen species and proteases.

In addition, anti-microbial proteins may be activated if a pathogen passes through the barrier offered by skin. There are several classes of antimicrobial proteins, such as acute phase proteins (C-reactive protein, for example, enhances phagocytosis and activates complement when it binds itself to the C-protein of S. pneumoniae ), lysozyme, and the complement system.

The complement system is a very complex group of serum proteins, which is activated in a cascade fashion. Three different pathways are involved in complement activation:

A cascade of protein activity follows complement activation; this cascade can result in a variety of effects, including opsonization of the pathogen, destruction of the pathogen by the formation and activation of the membrane attack complex, and inflammation.

Interferons are also anti-microbial proteins. These molecules are proteins that are secreted by virus-infected cells. These proteins then diffuse rapidly to neighboring cells, inducing the cells to inhibit the spread of the viral infection. Essentially, these anti-microbial proteins act to prevent the cell-to-cell proliferation of viruses.

Earlier studies of innate immunity utilized model organisms that lack adaptive immunity, such as the plant Arabidopsis thaliana, the fly Drosophila melanogaster, and the worm Caenorhabditis elegans. Advances have since been made in the field of innate immunology with the discovery of toll-like receptors (TLRs) and the intracellular nucleotide-binding site leucine-rich repeat proteins (NODs). NODs are receptors in mammal cells that are responsible for a large proportion of the innate immune recognition of pathogens.

In 1989, prior to the discovery of mammalian TLRs, Charles Janeway conceptualized and proposed that evolutionarily conserved features of infectious organisms were detected by the immune system through a set of specialized receptors, which he termed pathogen-associated molecular patterns (PAMPs) and pattern recognition receptors (PRRs), respectively. This insight was only fully appreciated after the discovery of TLRs by the Janeway lab in 1997. The TLRs now comprise the largest family of innate immune receptors (or PRRs). Janeways hypothesis has come to be known as the "stranger model" and substantial debate in the field persists to this day as to whether or not the concept of PAMPs and PRRs, as described by Janeway, is truly suitable to describe the mechanisms of innate immunity. The competing "danger model" was proposed in 1994 by Polly Matzinger and argues against the focus of the stranger model on microbial derived signals, suggesting instead that endogenous danger/alarm signals from distressed tissues serve as the principle purveyors of innate immune responses.

Both models are supported in the later literature, with discoveries that substances of both microbial and non-microbial sources are able to stimulate innate immune responses, which has led to increasing awareness that perhaps a blend of the two models would best serve to describe the currently known mechanisms governing innate immunity.

Splitting the immune system into innate and adaptive systems simplifies discussions of immunology. However, the systems actually are quite intertwined in a number of important respects.

One important example is the mechanisms of "antigen presentation." After they leave the thymus, T cells require activation to proliferate and differentiate into cytotoxic ("killer") T cells (CTLs). Activation is provided by antigen-presenting cells (APCs), a major category of which are the dendritic cells. These cells are part of the innate immune system.

Activation occurs when a dendritic cell simultaneously binds itself to a T "helper" cell's antigen receptor and to its CD28 receptor, which provides the "second signal" needed for DC activation. This signal is a means by which the dendritic cell conveys that the antigen is indeed dangerous, and that the next encountered T "killer" cells need to be activated. This mechanism is based on antigen-danger evaluation by the T cells that belong to the adaptive immune system. But the dendritic cells are often directly activated by engaging their toll-like receptors, getting their "second signal" directly from the antigen. In this way, they actually recognize in "first person" the danger, and direct the T killer attack. In this respect, the innate immune system therefore plays a critical role in the activation of the adaptive immune system.

Adjuvants, or chemicals that stimulate an immune response, provide artificially this "second signal" in procedures when an antigen that would not normally raise an immune response is artificially introduced into a host. With the adjuvant, the response is much more robust. Historically, a commonly-used formula is Freund's Complete Adjuvant, an emulsion of oil and mycobacterium. It was later discovered that toll-like receptors, expressed on innate immune cells, are critical in the activation of adaptive immunity.

Many factors can contribute to the general weakening of the immune system:

Despite high hopes, there are no medications that directly increase the activity of the immune system. Various forms of medication that activate the immune system may cause autoimmune disorders.

Suppression of the immune system is often used to control autoimmune disorders or inflammation when this causes excessive tissue damage, and to prevent transplant rejection after an organ transplant. Commonly used immunosuppressants include glucocorticoids, azathioprine, methotrexate, ciclosporin, cyclophosphamide, and mercaptopurine. In organ transplants, ciclosporin, tacrolimus, mycophenolate mofetil, and various others are used to prevent organ rejection through selective T cell inhibition.

The most important function of the human immune system occurs at the cellular level of the blood and tissues. The lymphatic and blood circulation systems are highways for specialized white blood cells to travel around the body. Each white blood cell type (B cells, T cells, natural killer cells, and macrophages) has a different responsibility, but all function together with the primary objective of recognizing, attacking, and destroying bacteria, viruses, cancer cells, and all substances seen as foreign. Without this coordinated effort, a person would not be able to survive more than a few days before succumbing to overwhelming infection.

Infections set off an alarm that alerts the immune system to bring out its defensive weapons. Natural killer cells and macrophages rush to the scene to consume and digest infected cells. If the first line of defense fails to control the threat, antibodies, produced by the B cells, upon the order of T helper cells, are custom-designed to hone in on the invader.

Many disorders of the human immune system fall into two broad categories that are characterized by:

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Immune system - New World Encyclopedia

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Laser Eye Treatment Center – Centre For Sight

October 23rd, 2015 7:45 pm

Have you been thinking of laser vision correction? Shed your doubts, concerns, specs and contact lenses, because blade free LASIK has arrived. With this technology, laser vision correction procedure has become 100 percent blade-free and completely safe.

In any LASIK procedure the first step is to create a corneal flap. In standard LASIK the surgeon uses a hand-held oscillating blade called microkeratome to cut the corneal flap. The flap is then folded and the Excimer laser treats the cornea to correct the refractive error.

In blade free LASIK, femtosecond laser has replaced the steel blade for creation of the corneal flap which improves visual outcome and post-operative comfort for the patient.

When you opt for advanced blade free LASIK procedure you get a completely integrated, personalized vision correction procedure based on cutting edge technology at every step. NASA recommends blade free LASIK to aspiring astronauts to get rid of their specs, as it can withstand high gravitational forces and has been found to be stable and secure even in extreme environmental conditions.

Advantages Precise corneal flap results in improved visual outcome Safer than standard LASIK Treats patients with high refractive errors and thin corneas too.

For people with nearsightedness (myopia), farsightedness (hyperopia) or astigmatism, LASIK surgery could be the key to a life free of bulky spectacles or contact lenses. But not everybody is a suitable candidate for this type of laser eye surgery. Here are the few main questions a LASIK surgeon is likely to ask you during a consultation.

Centre for Sight is equipped with trained and experienced eye specialists to help the patients in dealing of respective issues with specialization and care with advanced Blade-free LASIK surgery. This laser eye treatment creates flap in Blade-free LASIK which reduces risk of an irregular flap. You can trust our renowned eye specialists for Lasik eye surgery which is one of the Lasik Treatment in India.

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Life and Death in Terms of Embryonic Stem Cells

October 23rd, 2015 7:45 pm

Since the beginning of time, mankind has pondered the question of what it means to be alive. When, precisely, can one be considered a human being? With the advent of stem cell research, we are forced to confront this question head-on. Human embryonic stem cells have enormous medical potential; by harnessing the power of their undifferentiated state, we may be able to cure diseases and disabilities that have plagued mankind for millennia. Rather than simply treating the symptoms of debilitating conditions, we may be able to attack the diseases at their source, working from within the body itself. However, obtaining embryonic stem cells, despite the many benefits that may result, poses many new ethical questions. Embryonic stem cells are generated during the early stages of the formation of a human embryo. These cells adhere to the wall of the blastocyst and, in the process of obtaining them, the embryo is destroyed. The ethical dilemma is this; does this tiny but powerful group of cells constitute a human life, and, if so, it is justifiable to take it in order to save others?

What are Embryonic Stem Cells?

A fertilized embryo must undergo a series of divisions in order to grow. There are many different types of cells in an adult human, but, with the exception of red blood cells and lymph cells, every cell in the human body contains an identical genome. [5] If all cells contain an identical DNA sequence and originate from the same source, how does each cell know what to become? The answer lies in a population of cells known as stem cells. To be classified as a stem cell requires the possession of two key abilities

Unlike somatic cells, stem cells begin, not with a single fate, but in an undifferentiated state. This initial lack of specificity is crucial, for their division has the ability to field more unspecified cells or ones that will eventually become any cell in the organism. [3] The earliest stem cells are known as totipotent, meaning that they have the ability to differentiate into any cell in the embryo or the resulting adult. As the cells divide, they progressively lose their totipotent abilities, becoming more and more specified. The egg-sperm unit divides every 12-18 hours; first from two cells into four, then eight, then sixteen. [5] After this third cell division, totipotent cells give rise to pluripotent stem cells, which can become nearly any cell in the body. The unit is now a hollow ball known as a blastula, and with pluripotent cells adhered to the wall in a clump known as the Inner Cell Mass. The wall will become the supportive placenta as the embryo grows, with the ICM becoming the embryo itself. [7] As the pluripotent cells divide, they develop into cells called Lineage Restricted Stem Cells, then Progenitor Cells, and finally Differentiated Cells with pre-determined function. [See Figure 1] Each time the cell divides, it becomes more highly specified, and less plastic in terms of medical potential.

Why use Embryonic Stem Cells?

Because of their unique ability to generate so many different kinds of cells, and potential to reside in several areas of the human body, stem cells may eventually establish themselves as a cornerstone of 21st century medicine. Stem cell research has created an entirely new branch of medicine, called Regenerative Medicine. The specialty of this new discipline would be to repair organs or tissues affected or destroyed by age, disease or injury. [5] [6] [10] In at least one instance, experimental techniques have been highly successful. Scientists have developed large sheets of epidermal cells, which can be used to repair burns that have destroyed the full thickness of the skin. [10] Researchers are hoping to branch out and use the self-renewal and differentiating abilities of embryonic stem cells to treat diseases such as Parkinsons Disease or Type 1 Diabetes, or even paralysis resulting from damage to the spinal cord. [5] The hope is to learn to culture the cells and to manipulate their differentiation prior to inserting them into a patient. The cells would, in theory, be used to repair or re-grow the damaged tissues without being rejected by the patients immune system. In diabetic patients, the cells may be used to replace non-functioning pancreatic cells, while in paraplegic individuals the cells may replace the damaged components of the spine, allowing them to walk again.

An Ethical Mess: Are we taking a life in order to give life?

Obtaining embryonic stem cells for research purposes invariably results in the destruction of the embryo. Many individuals pose the question of whether this constitutes taking one human beings life in order to preserve the life of another. Currently, there are five major views concerning whether this ball of cells is in fact alive. Each viewpoint suggests that ones life begins at a different point in development.

Genetic View: Fertilization

Embryological View: Gastrulation A second position posits that one becomes human at gastrulation. [5] [12] Between 12 and 14 days after fertilization, the embryo begins to form germ layers, which will eventually develop into the three major tissue types found in adults. [17] Scientists view this as a turning point in development for, at the onset of gastrulation, the embryo can no longer divide to form twins. [12] If it survives, it is committed to forming a single individual. The blastula, now called a gastrula, develops three distinct layers of cells; the ectoderm, the mesoderm and the endoderm. The outermost layer, the ectoderm, will develop into the central nervous system, hair, fingernails and the epidermis of the skin. The endoderm, the innermost layer, gives rise to the lining of the digestive and respiratory tracts, and the glands such as the pancreas and liver. The mesoderm, the middle layer, is perhaps the most diverse, for it will eventually yield the muscles, the gonads, cartilage and the circulatory system, to name only a few. [17] Cells that are beginning to form the germ layers are too far along the differentiation pathway to be as useful as their predecessors. Considering the embryo to be alive only once gastrulation occurs is consistent with views in favor of Embryonic Stem Cell research. If one chooses this viewpoint, experimenting with embryos prior to this would not constitute taking a human life, for researchers would be obtaining the cells much earlier than the time of gastrulation.

Neurological View: EEG Activity The third major viewpoint is that human life begins with the acquisition of recognizable brain activity. At approximately, 24 weeks of age, there is a sufficient amount of coherence in the fetus developing brain that its activity can be seen via an electroencephalogram (EEG). [5] [18] In the United States, death is often determined by brain function. As stated in the Uniform Determination of Death Act, so-called brain death is defined as when the entire brain ceas[es] to function, irreversibly. The entire brain includes the brain stem, as well as the neocortex. The concept of entire brain distinguishes determination of death under this Act from neocortical death or persistent vegetative state. " [16] An individual whose cardiovascular and respiratory systems still function, but who produces no brain activity is considered to be dead. The fetal heart beat is present from approximately 7 weeks of gestational age, [4] but brain activity is not present until 24 weeks. This follows the logic present in US law; if we choose to define death in terms of the cessation of brain activity, we may choose to define life by its onset. This position also supports the use of stem-cell research, as the cells would be obtained months before the commencement of any recognizable brain activity.

Ecological View: Survival A fourth standpoint in terms of human life is viability. Some individuals choose to define human life as the point where the fetus is viable outside the mothers womb. [18] This has often been determined by lung function, as the respiratory system is both crucial for survival and one of the last systems to finish developing in the human fetus. Development of the lungs begins as early as week 4 of gestation, and continues until birth with the proliferation of the alveolar sacs. [8] [14] Surfactant, a compound produced in the alveoli beginning at about 34 weeks of age, reduces surface tension in the lungs and allows them to expand. Without this compound, infants have severely decreased lung function, which may prove fatal. Premature infants also have underdeveloped brain and immune function, which makes them highly susceptible to both apnea and infection as well as a host of other health problems. [14] Historically, many infants born before 28 weeks of age were unable to survive. [5] However, with the continued development of neonatal intensive care and cardio-pulmonary life support, the cutoff line for viability has become increasingly blurred. One is now forced to question whether a neonate born at 25 weeks of age with severely impaired brain and body function and kept alive only with assistance of machines is truly living.

The Birth View

Conclusion

Stem cells hold a power never before seen in medicine. If properly controlled, they may allow us to fight diseases that are now considered incurable. Their use, however, remains highly controversial, owing to the destruction of embryos in the process. Advocates against embryonic stem-cell research and use argue that the tiny ball of cells inside the blastula is alive. These individuals take the Fertilization viewpoint, maintaining that a human, no matter how small, is still a human. To them, the use of embryonic stem cells, even to save many others, can never justify the destruction of a human life. Supporters of embryonic stem cells maintain that zygotes are not truly human prior to gastrulation, brain function or even birth itself. Use of the inner cell mass in its earliest stages does not constitute ethical wrongdoing. The cells are obtained so early that the mass does not yet possess any human qualities, such as differentiated tissues or brain function. These individuals also point out that the majority of the blastocysts being used would not survive to begin with, and that anti-stem cell groups should see that the ends justify the means. Clearly stem cells have many potential benefits for mankind, but at the moment they are surrounded by a controversy that is unlikely to resolve itself any time soon. In the future, perhaps we will find a way to manipulate differentiated cells to have undifferentiated properties, thereby avoiding the ethics of embryonic stem cell use. However, until that day arrives, we must continue to ask ourselves the question of what it means to be human.

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Life and Death in Terms of Embryonic Stem Cells

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Cell Therapy & Regenerative Medicine – University of Utah …

October 23rd, 2015 11:42 am

About Us

Learn more about Cell Therapy & Regenerative Medicine.

What is a Neurosphere?

CTRM provides services to develop and manufacture novel cellular therapy.

The Cell Therapy and Regenerative Medicine Program (CTRM) at the University of Utah provides the safest, highest quality products for therapeutic use and research. Our goals are to facilitate the availability of cellular and tissue based therapies to patients by bridging efforts in basic research, bioengineering and the medical sciences. As well as assemble the expertise and infrastructure to address the complex regulatory, financial and manufacturing challenges associated with delivering cell and tissue based products to patients.

To support hematopoietic stem cell transplants and to deliver innovative cellular and tissue engineered products to patients by providing comprehensive bench to bedside services that coordinate the efforts of clinicians, researchers, and bioengineers.

Product quality, safety and efficacy; Optimization of resource utilization; Promotion of productive collaborations; Support of innovative products; and Adherence to scientific and ethical excellence.

The Center of Excellence for the state of Utah that translates cutting-edge cell therapy and engineered tissue based research into clinical products that extend and improve the quality of life of individuals suffering from debilitating diseases and injuries.

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Cell Therapy & Regenerative Medicine - University of Utah ...

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Policy & Ethics – Issues in Genetics

October 22nd, 2015 11:43 am

Feature HHS announces proposal to update rules governing research on study participant

Medical advances wouldn't be possible without individuals willing to volunteer to participate in research. Today's proposed changes to the Common Rule for protecting human research participants would update safeguards for participants and reduce unnecessary administrative burdens. For more information and details on providing comments on the proposed rule, go to: HHS News Release Read the Notice of Proposed Rulemaking [federalregister.gov]

The use of human subjects in the field of genomics raises a number of key policy considerations that are being addressed at NHGRI and elsewhere. Learn more about his important topic with a new fact sheet from the Policy and Program Analysis Branch. Read more

NIH has issued a position statement on the use of public or private cloud systems for storing and analyzing controlled-access genomic data under the NIH Genomic Data Sharing (GDS) Policy. Read the Position Statement

This fall, Cari Young, Sc.M., and Julie Nadel, Ph.D., will join the National Human Genome Research Institute as American Society of Human Genetics (ASHG)/National Human Genome Research Institute (NHGRI) education and public policy fellows. Ms. Young will spend time working with NHGRI's Policy and Program Analysis Branch, while Dr. Nadel will direct her talents to the Education and Community Involvement Branch. Both credit their high school biology classes with inspiring the direction of their careers. Read more

Last Updated: September 17, 2015

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Policy & Ethics - Issues in Genetics

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Preimplantation genetic diagnosis – Wikipedia, the free …

October 22nd, 2015 11:43 am

Pre-implantation genetic diagnosis (PGD or PIGD) refers to genetic profiling of embryos prior to implantation (as a form of embryo profiling), and sometimes even of oocytes prior to fertilization. PGD is considered in a similar fashion to prenatal diagnosis. When used to screen for a specific genetic disease, its main advantage is that it avoids selective pregnancy termination as the method makes it highly likely that the baby will be free of the disease under consideration. PGD thus is an adjunct to assisted reproductive technology, and requires in vitro fertilization (IVF) to obtain oocytes or embryos for evaluation. The term preimplantation genetic screening (PGS) is used to denote procedures that do not look for a specific disease but use PGD techniques to identify embryos at risk. The PGD allows studying the DNA of eggs or embryos to select those that carry certain damaging characteristics. It is useful when there are previous chromosomal or genetic disorders in the family and within the context of in vitro fertilization programs. [1]

The procedures may also be called preimplantation genetic profiling to adapt to the fact that they are sometimes used on oocytes or embryos prior to implantation for other reasons than diagnosis or screening.[2]

Procedures performed on sex cells before fertilization may instead be referred to as methods of oocyte selection or sperm selection, although the methods and aims partly overlap with PGD.

In 1967, Robert Edwards and Richard Gardner reported the successful identification of the sex of rabbit blastocysts.[3] It was not until the 1980s that human IVF was fully developed, which coincided with the breakthrough of the highly sensitive polymerase chain reaction (PCR) technology. Handyside and collaborators' first successful tests happened in October 1989, with the first births in 1990[4] though the preliminary experiments had been published some years earlier.[5][6] In these first cases, PCR was used for sex determination of patients carrying X-linked diseases.

PGD became increasingly popular during the 1990s when it was used to determine a handful of severe genetic disorders, such as sickle-cell anemia, Tay Sachs disease, Duchennes muscular dystrophy, and Beta-thalassemia.[7]

As with all medical interventions associated with human reproduction, PGD raises strong, often conflicting opinions of social acceptability, particularly due to its eugenic implications. In some countries, such as Germany,[8] PGD is permitted for only preventing stillbirths and genetic diseases, in other countries PGD is permitted in law but its operation is controlled by the state.[clarification needed]

PGD can potentially be used to select embryos to be without a genetic disorder, to have increased chances of successful pregnancy, to match a sibling in HLA type in order to be a donor, to have less cancer predisposition, and for sex selection.

PGD is available for a large number of monogenic disorders that is, disorders due to a single gene only (autosomal recessive, autosomal dominant or X-linked) or of chromosomal structural aberrations (such as a balanced translocation). PGD helps these couples identify embryos carrying a genetic disease or a chromosome abnormality, thus avoiding diseased offspring. The most frequently diagnosed autosomal recessive disorders are cystic fibrosis, Beta-thalassemia, sickle cell disease and spinal muscular atrophy type 1. The most common dominant diseases are myotonic dystrophy, Huntington's disease and Charcot-Marie-Tooth disease; and in the case of the X-linked diseases, most of the cycles are performed for fragile X syndrome, haemophilia A and Duchenne muscular dystrophy. Though it is quite infrequent, some centers report PGD for mitochondrial disorders or two indications simultaneously.

PGD is also now being performed in a disease called Hereditary multiple exostoses (MHE/MO/HME).

In addition, there are infertile couples who carry an inherited condition and who opt for PGD as it can be easily combined with their IVF treatment.

Preimplantation genetic profiling (PGP) has been suggested as a method to determine embryo quality in in vitro fertilization, in order to select an embryo that appears to have the greatest chances for successful pregnancy. However, as the results of PGP rely on the assessment of a single cell, PGP has inherent limitations as the tested cell may not be representative of the embryo because of mosaicism.[9]

A systematic review and meta-analysis of existing randomized controlled trials came to the result that there is no evidence of a beneficial effect of PGP as measured by live birth rate.[9] On the contrary, for women of advanced maternal age, PGP significantly lowers the live birth rate.[9] Technical drawbacks, such as the invasiveness of the biopsy, and chromosomal mosaicism are the major underlying factors for inefficacy of PGP.[9]

Alternative methods to determine embryo quality for prediction of pregnancy rates include microscopy as well as profiling of RNA and protein expression.

Human leukocyte antigen (HLA) typing of embryos, so that the child's HLA matches a sick sibling, availing for cord-blood stem cell donation.[10] The child is in this sense a "savior sibling" for the recipient child. HLA typing has meanwhile become an important PGD indication in those countries where the law permits it.[11] The HLA matching can be combined with the diagnosis for monogenic diseases such as Fanconi anaemia or beta thalassemia in those cases where the ailing sibling is affected with this disease, or it may be exceptionally performed on its own for cases such as children with leukaemia. The main ethical argument against is the possible exploitation of the child, although some authors maintain that the Kantian imperative is not breached since the future donor child will not only be a donor but also a loved individual within the family.

A more recent application of PGD is to diagnose late-onset diseases and (cancer) predisposition syndromes. Since affected individuals remain healthy until the onset of the disease, frequently in the fourth decade of life, there is debate on whether or not PGD is appropriate in these cases. Considerations include the high probability of developing the disorders and the potential for cures. For example, in predisposition syndromes, such as BRCA mutations which predispose the individual to breast cancer, the outcomes are unclear. Although PGD is often regarded as an early form of prenatal diagnosis, the nature of the requests for PGD often differs from those of prenatal diagnosis requests made when the mother is already pregnant. Some of the widely accepted indications for PGD would not be acceptable for prenatal diagnosis.

Preimplantation genetic diagnosis provides a method of prenatal sex discernment even before implantation, and may therefore be termed preimplantation sex discernment. Potential applications of preimplantation sex discernment include:

In the case of families at risk for X-linked diseases, patients are provided with a single PGD assay of gender identification. Gender selection offers a solution to individuals with X-linked diseases who are in the process of getting pregnant. The selection of a female embryo offspring is used in order to prevent the transmission of X-linked Mendelian recessive diseases. Such X-linked Mendelian diseases include Duchenne muscular dystrophy (DMD), and hemophilia A and B, which are rarely seen in females because the offspring is unlikely to inherit two copies of the recessive allele. Since two copies of the mutant X allele are required for the disease to be passed on to the female offspring, females will at worst be carriers for the disease but may not necessarily have a dominant gene for the disease. Males on the other hand only require one copy of the mutant X allele for the disease to occur in one's phenotype and therefore, the male offspring of a carrier mother has a 50% chance of having the disease. Reasons may include the rarity of the condition or because affected males are reproductively disadvantaged. Therefore, medical uses of PGD for selection of a female offspring to prevent the transmission of X-linked Mendelian recessive disorders are often applied. Preimplantation genetic diagnosis applied for gender selection can be used for non-Mendelian disorders that are significantly more prevalent in one sex. Three assessments are made prior to the initiation of the PGD process for the prevention of these inherited disorders. In order to validate the use of PGD, gender selection is based on the seriousness of the inherited condition, the risk ratio in either sex, or the options for disease treatment.[12]

A 2006 survey reveals that PGD has occasionally been used to select an embryo for the presence of a particular disease or disability, such as deafness, in order that the child would share that characteristic with the parents.[2]

PGD is a form of genetic diagnosis performed prior to implantation. This implies that the patients oocytes should be fertilized in vitro and the embryos kept in culture until the diagnosis is established. It is also necessary to perform a biopsy on these embryos in order to obtain material on which to perform the diagnosis. The diagnosis itself can be carried out using several techniques, depending on the nature of the studied condition. Generally, PCR-based methods are used for monogenic disorders and FISH for chromosomal abnormalities and for sexing those cases in which no PCR protocol is available for an X-linked disease. These techniques need to be adapted to be performed on blastomeres and need to be thoroughly tested on single-cell models prior to clinical use. Finally, after embryo replacement, surplus good quality unaffected embryos can be cryopreserved, to be thawed and transferred back in a next cycle.

Currently, all PGD embryos are obtained by assisted reproductive technology, although the use of natural cycles and in vivo fertilization followed by uterine lavage was attempted in the past and is now largely abandoned. In order to obtain a large group of oocytes, the patients undergo controlled ovarian stimulation (COH). COH is carried out either in an agonist protocol, using gonadotrophin-releasing hormone (GnRH) analogues for pituitary desensitisation, combined with human menopausal gonadotrophins (hMG) or recombinant follicle stimulating hormone (FSH), or an antagonist protocol using recombinant FSH combined with a GnRH antagonist according to clinical assessment of the patients profile (age, body mass index (BMI), endocrine parameters). hCG is administered when at least three follicles of more than 17mm[verification needed] mean diameter are seen at transvaginal ultrasound scan. Transvaginal ultrasound-guided oocyte retrieval is scheduled 36 hours after hCG administration. Luteal phase supplementation consists of daily intravaginal administration of 600g of natural micronized progesterone.

Oocytes are carefully denudated from the cumulus cells, as these cells can be a source of contamination during the PGD if PCR-based technology is used. In the majority of the reported cycles, intracytoplasmic sperm injection (ICSI) is used instead of IVF. The main reasons are to prevent contamination with residual sperm adhered to the zona pellucida and to avoid unexpected fertilization failure. The ICSI procedure is carried out on mature metaphase-II oocytes and fertilization is assessed 1618 hours after. The embryo development is further evaluated every day prior to biopsy and until transfer to the womans uterus. During the cleavage stage, embryo evaluation is performed daily on the basis of the number, size, cell-shape and fragmentation rate of the blastomeres. On day 4, embryos were scored in function of their degree of compaction and blastocysts were evaluated according to the quality of the throphectoderm and inner cell mass, and their degree of expansion.

As PGD can be performed on cells from different developmental stages, the biopsy procedures vary accordingly. Theoretically, the biopsy can be performed at all preimplantation stages, but only three have been suggested: on unfertilised and fertilised oocytes (for polar bodies, PBs), on day three cleavage-stage embryos (for blastomeres) and on blastocysts (for trophectoderm cells).

The biopsy procedure always involves two steps: the opening of the zona pellucida and the removal of the cell(s). There are different approaches to both steps, including mechanical, chemical, and physical (Tyrodes acidic solution) and laser technology for the breaching of the zona pellucida, extrusion or aspiration for the removal of PBs and blastomeres, and herniation of the trophectoderm cells.

A polar body biospy is the sampling of a polar body, which is a small haploid cell that is formed concomitantly as an egg cell during oogenesis, but which generally does not have the ability to be fertilized. Compared to a blastocyst biopsy, a polar body biopsy can potentially be of lower costs, less harmful side-effects, and more sensitive in detecting abnormalities.[13] The main advantage of the use of polar bodies in PGD is that they are not necessary for successful fertilisation or normal embryonic development, thus ensuring no deleterious effect for the embryo. One of the disadvantages of PB biopsy is that it only provides information about the maternal contribution to the embryo, which is why cases of autosomal dominant and X-linked disorders that are maternally transmitted can be diagnosed, and autosomal recessive disorders can only partially be diagnosed. Another drawback is the increased risk of diagnostic error, for instance due to the degradation of the genetic material or events of recombination that lead to heterozygous first polar bodies.

Cleavage-stage biopsy is generally performed the morning of day three post-fertilization, when normally developing embryos reach the eight-cell stage. The biopsy is usually performed on embryos with less than 50% of anucleated fragments and at an 8-cell or later stage of development. A hole is made in the zona pellucida and one or two blastomeres containing a nucleus are gently aspirated or extruded through the opening. The main advantage of cleavage-stage biopsy over PB analysis is that the genetic input of both parents can be studied. On the other hand, cleavage-stage embryos are found to have a high rate of chromosomal mosaicism, putting into question whether the results obtained on one or two blastomeres will be representative for the rest of the embryo. It is for this reason that some programs utilize a combination of PB biopsy and blastomere biopsy. Furthermore, cleavage-stage biopsy, as in the case of PB biopsy, yields a very limited amount of tissue for diagnosis, necessitating the development of single-cell PCR and FISH techniques. Although theoretically PB biopsy and blastocyst biopsy are less harmful than cleavage-stage biopsy, this is still the prevalent method. It is used in approximately 94% of the PGD cycles reported to the ESHRE PGD Consortium. The main reasons are that it allows for a safer and more complete diagnosis than PB biopsy and still leaves enough time to finish the diagnosis before the embryos must be replaced in the patients uterus, unlike blastocyst biopsy. Of all cleavage-stages, it is generally agreed that the optimal moment for biopsy is at the eight-cell stage. It is diagnostically safer than the PB biopsy and, unlike blastocyst biopsy, it allows for the diagnosis of the embryos before day 5. In this stage, the cells are still totipotent and the embryos are not yet compacting. Although it has been shown that up to a quarter of a human embryo can be removed without disrupting its development, it still remains to be studied whether the biopsy of one or two cells correlates with the ability of the embryo to further develop, implant and grow into a full term pregnancy.

Not all methods of opening the zona pellucida have the same success rate because the well-being of the embryo and/or blastomere may be impacted by the procedure used for the biopsy. Zona drilling with acid Tyrodes solution (ZD) was looked at in comparison to partial zona dissection (PZD) to determine which technique would lead to more successful pregnancies and have less of an effect on the embryo and/or blastomere. ZD uses a digestive enzyme like pronase which makes it a chemical drilling method. The chemicals used in ZD may have a damaging effect on the embryo. PZD uses a glass microneedle to cut the zona pellucida which makes it a mechanical dissection method that typically needs skilled hands to perform the procedure. In a study that included 71 couples, ZD was performed in 26 cycles from 19 couples and PZD was performed in 59 cycles from 52 couples. In the single cell analysis, there was a success rate of 87.5% in the PZD group and 85.4% in the ZD group. The maternal age, number of oocytes retrieved, fertilization rate, and other variables did not differ between the ZD and PZD groups. It was found that PZD led to a significantly higher rate of pregnancy (40.7% vs 15.4%), ongoing pregnancy (35.6% vs 11.5%), and implantation (18.1% vs 5.7%) than ZD. This suggests that using the mechanical method of PZD in blastomere biopsies for preimplantation genetic diagnosis may be more proficient than using the chemical method of ZD. The success of PZD over ZD could be attributed to the chemical agent in ZD having a harmful effect on the embryo and/or blastomere. Currently, zona drilling using a laser is the predominant method of opening the zona pellucida. Using a laser is an easier technique than using mechanical or chemical means. However, laser drilling could be harmful to the embryo and it is very expensive for in vitro fertilization laboratories to use especially when PGD is not a prevalent process as of modern times. PZD could be a viable alternative to these issues.[14]

In an attempt to overcome the difficulties related to single-cell techniques, it has been suggested to biopsy embryos at the blastocyst stage, providing a larger amount of starting material for diagnosis. It has been shown that if more than two cells are present in the same sample tube, the main technical problems of single-cell PCR or FISH would virtually disappear. On the other hand, as in the case of cleavage-stage biopsy, the chromosomal differences between the inner cell mass and the trophectoderm (TE) can reduce the accuracy of diagnosis, although this mosaicism has been reported to be lower than in cleavage-stage embryos.

TE biopsy has been shown to be successful in animal models such as rabbits,[15] mice[16] and primates.[17] These studies show that the removal of some TE cells is not detrimental to the further in vivo development of the embryo.

Human blastocyst-stage biopsy for PGD is performed by making a hole in the ZP on day three of in vitro culture. This allows the developing TE to protrude after blastulation, facilitating the biopsy. On day five post-fertilization, approximately five cells are excised from the TE using a glass needle or laser energy, leaving the embryo largely intact and without loss of inner cell mass. After diagnosis, the embryos can be replaced during the same cycle, or cryopreserved and transferred in a subsequent cycle.

There are two drawbacks to this approach, due to the stage at which it is performed. First, only approximately half of the preimplantation embryos reach the blastocyst stage. This can restrict the number of blastocysts available for biopsy, limiting in some cases the success of the PGD. Mc Arthur and coworkers[18] report that 21% of the started PGD cycles had no embryo suitable for TE biopsy. This figure is approximately four times higher than the average presented by the ESHRE PGD consortium data, where PB and cleavage-stage biopsy are the predominant reported methods. On the other hand, delaying the biopsy to this late stage of development limits the time to perform the genetic diagnosis, making it difficult to redo a second round of PCR or to rehybridize FISH probes before the embryos should be transferred back to the patient.

Sampling of cumulus cells can be performed in addition to a sampling of polar bodies or cells from the embryo. Because of the molecular interactions between cumulus cells and the oocyte, gene expression profiling of cumulus cells can be performed to estimate oocyte quality and the efficiency of an ovarian hyperstimulation protocol, and may indirectly predict aneuploidy, embryo development and pregnancy outcomes.[19][19]

Fluorescent in situ hybridization (FISH) and Polymerase chain reaction (PCR) are the two commonly used, first-generation technologies in PGD. PCR is generally used to diagnose monogenic disorders and FISH is used for the detection of chromosomal abnormalities (for instance, aneuploidy screening or chromosomal translocations). Over the past few years, various advancements in PGD testing have allowed for an improvement in the comprehensiveness and accuracy of results available depending on the technology used.[20] Recently a method was developed allowing to fix metaphase plates from single blastomeres. This technique in conjunction with FISH, m-FISH can produce more reliable results, since analysis is done on whole metaphase plates[21]

In addition to FISH and PCR, single cell genome sequencing is being tested as a method of preimplantation genetic diagnosis.[22] This characterizes the complete DNA sequence of the genome of the embryo.

FISH is the most commonly applied method to determine the chromosomal constitution of an embryo. In contrast to karyotyping, it can be used on interphase chromosomes, so that it can be used on PBs, blastomeres and TE samples. The cells are fixated on glass microscope slides and hybridised with DNA probes. Each of these probes are specific for part of a chromosome, and are labelled with a fluorochrome. Currently, a large panel of probes are available for different segments of all chromosomes, but the limited number of different fluorochromes confines the number of signals that can be analysed simultaneously.

The type and number of probes that are used on a sample depends on the indication. For sex determination (used for instance when a PCR protocol for a given X-linked disorder is not available), probes for the X and Y chromosomes are applied along with probes for one or more of the autosomes as an internal FISH control. More probes can be added to check for aneuploidies, particularly those that could give rise to a viable pregnancy (such as a trisomy 21). The use of probes for chromosomes X, Y, 13, 14, 15, 16, 18, 21 and 22 has the potential of detecting 70% of the aneuploidies found in spontaneous abortions.

In order to be able to analyse more chromosomes on the same sample, up to three consecutive rounds of FISH can be carried out. In the case of chromosome rearrangements, specific combinations of probes have to be chosen that flank the region of interest. The FISH technique is considered to have an error rate between 5 and 10%.

The main problem of the use of FISH to study the chromosomal constitution of embryos is the elevated mosaicism rate observed at the human preimplantation stage. A meta-analysis of more than 800 embryos came to the result that approximately 75% of preimplantation embryos are mosaic, of which approximately 60% are diploidaneuploid mosaic and approximately 15% aneuploid mosaic.[23] Li and co-workers[24] found that 40% of the embryos diagnosed as aneuploid on day 3 turned out to have a euploid inner cell mass at day 6. Staessen and collaborators found that 17.5% of the embryos diagnosed as abnormal during PGS, and subjected to post-PGD reanalysis, were found to also contain normal cells, and 8.4% were found grossly normal.[25] As a consequence, it has been questioned whether the one or two cells studied from an embryo are actually representative of the complete embryo, and whether viable embryos are not being discarded due to the limitations of the technique.

Kary Mullis conceived PCR in 1985 as an in vitro simplified reproduction of the in vivo process of DNA replication. Taking advantage of the chemical properties of DNA and the availability of thermostable DNA polymerases, PCR allows for the enrichment of a DNA sample for a certain sequence. PCR provides the possibility to obtain a large quantity of copies of a particular stretch of the genome, making further analysis possible. It is a highly sensitive and specific technology, which makes it suitable for all kinds of genetic diagnosis, including PGD. Currently, many different variations exist on the PCR itself, as well as on the different methods for the posterior analysis of the PCR products.

When using PCR in PGD, one is faced with a problem that is inexistent in routine genetic analysis: the minute amounts of available genomic DNA. As PGD is performed on single cells, PCR has to be adapted and pushed to its physical limits, and use the minimum amount of template possible: which is one strand. This implies a long process of fine-tuning of the PCR conditions and a susceptibility to all the problems of conventional PCR, but several degrees intensified. The high number of needed PCR cycles and the limited amount of template makes single-cell PCR very sensitive to contamination. Another problem specific to single-cell PCR is the allele drop out (ADO) phenomenon. It consists of the random non-amplification of one of the alleles present in a heterozygous sample. ADO seriously compromises the reliability of PGD as a heterozygous embryo could be diagnosed as affected or unaffected depending on which allele would fail to amplify. This is particularly concerning in PGD for autosomal dominant disorders, where ADO of the affected allele could lead to the transfer of an affected embryo.

The establishment of a diagnosis in PGD is not always straightforward. The criteria used for choosing the embryos to be replaced after FISH or PCR results are not equal in all centres. In the case of FISH, in some centres only embryos are replaced that are found to be chromosomally normal (that is, showing two signals for the gonosomes and the analysed autosomes) after the analysis of one or two blastomeres, and when two blastomeres are analysed, the results should be concordant. Other centres argue that embryos diagnosed as monosomic could be transferred, because the false monosomy (i.e. loss of one FISH signal in a normal dipoloid cell) is the most frequently occurring misdiagnosis. In these cases, there is no risk for an aneuploid pregnancy, and normal diploid embryos are not lost for transfer because of a FISH error. Moreover, it has been shown that embryos diagnosed as monosomic on day 3 (except for chromosomes X and 21), never develop to blastocyst, which correlates with the fact that these monosomies are never observed in ongoing pregnancies.

Diagnosis and misdiagnosis in PGD using PCR have been mathematically modelled in the work of Navidi and Arnheim and of Lewis and collaborators.[26][27] The most important conclusion of these publications is that for the efficient and accurate diagnosis of an embryo, two genotypes are required. This can be based on a linked marker and disease genotypes from a single cell or on marker/disease genotypes of two cells. An interesting aspect explored in these papers is the detailed study of all possible combinations of alleles that may appear in the PCR results for a particular embryo. The authors indicate that some of the genotypes that can be obtained during diagnosis may not be concordant with the expected pattern of linked marker genotypes, but are still providing sufficient confidence about the unaffected genotype of the embryo. Although these models are reassuring, they are based on a theoretical model, and generally the diagnosis is established on a more conservative basis, aiming to avoid the possibility of misdiagnosis. When unexpected alleles appear during the analysis of a cell, depending on the genotype observed, it is considered that either an abnormal cell has been analysed or that contamination has occurred, and that no diagnosis can be established. A case in which the abnormality of the analysed cell can be clearly identified is when, using a multiplex PCR for linked markers, only the alleles of one of the parents are found in the sample. In this case, the cell can be considered as carrying a monosomy for the chromosome on which the markers are located, or, possibly, as haploid. The appearance of a single allele that indicates an affected genotype is considered sufficient to diagnose the embryo as affected, and embryos that have been diagnosed with a complete unaffected genotype are preferred for replacement. Although this policy may lead to a lower number of unaffected embryos suitable for transfer, it is considered preferable to the possibility of a misdiagnosis.

Preimplantation genetic haplotyping (PGH) is a PGD technique wherein a haplotype of genetic markers that have statistical associations to a target disease are identified rather than the mutation causing the disease.[28]

Once a panel of associated genetic markers have been established for a particular disease it can be used for all carriers of that disease.[28] In contrast, since even a monogenic disease can be caused by many different mutations within the affected gene, conventional PGD methods based on finding a specific mutation would require mutation-specic tests. Thus, PGH widens the availability of PGD to cases where mutation-specific tests are unavailable.

PGH also has an advantage over FISH in that FISH is not usually able to make the differentiation between embryos that possess the balanced form of a chromosomal translocation and those carrying the homologous normal chromosomes. This inability can be seriously harmful to the diagnosis made. PGH can make the distinction that FISH often cannot. PGH does this by using polymorphic markers that are better suited at recognizing translocations. These polymorphic markers are able to distinguish between embryos that carried normal, balanced, and unbalanced translocations. FISH also requires more cell fixation for analysis whereas PGH requires only transfer of cells into polymerase chain reaction tubes. The cell transfer is a simpler method and leaves less room for analysis failure.[29]

Embryo transfer is usually performed on day three or day five post-fertilization, the timing depending on the techniques used for PGD and the standard procedures of the IVF centre where it is performed.

With the introduction in Europe of the single-embryo transfer policy, which aims at the reduction of the incidence of multiple pregnancies after ART, usually one embryo or early blastocyst is replaced in the uterus. Serum hCG is determined at day 12. If a pregnancy is established, an ultrasound examination at 7 weeks is performed to confirm the presence of a fetal heartbeat. Couples are generally advised to undergo PND because of the, albeit low, risk of misdiagnosis.

It is not unusual that after the PGD, there are more embryos suitable for transferring back to the woman than necessary. For the couples undergoing PGD, those embryos are very valuable, as the couple's current cycle may not lead to an ongoing pregnancy. Embryo cryopreservation and later thawing and replacement can give them a second chance to pregnancy without having to redo the cumbersome and expensive ART and PGD procedures.

PGD/PGS is an invasive procedure that requires a serious consideration, according to Michael Tucker, Ph.D., Scientific Director and Chief Embryologist at Georgia Reproductive Specialists in Atlanta.[30] One of the risks of PGD includes damage to the embryo during the biopsy procedure (which in turn destroys the embryo as a whole), according to Serena H. Chen, M.D., a New Jersey reproductive endocrinologist with IRMS Reproductive Medicine at Saint Barnabas.[30] Another risk is cryopreservation where the embryo is stored in a frozen state and thawed later for the procedure. About 20% of the thawed embryos do not survive.[31][32] There has been a study indicating a biopsied embryo has a less rate of surviving cryopreservation.[33] Another study suggests that PGS with cleavage-stage biopsy results in a significantly lower live birth rate for women of advanced maternal age.[34] Also, another study recommends the caution and a long term follow-up as PGD/PGS increases the perinatal death rate in multiple pregnancies.[35]

In a mouse model study, PGD has been attributed to various long term risks including a weight gain and memory decline; a proteomic analysis of adult mouse brains showed significant differences between the biopsied and the control groups, of which many are closely associated with neurodegenerative disorders like Alzheimers and Down Syndrome.[36]

PGD has raised ethical issues, although this approach could reduce reliance on fetal deselection during pregnancy. The technique can be used for prenatal sex discernment of the embryo, and thus potentially can be used to select embryos of one sex in preference of the other in the context of "family balancing". It may be possible to make other "social selection" choices in the future that introduce socio-economic concerns. Only unaffected embryos are implanted in a womans uterus; those that are affected are either discarded or donated to science.[37]

PGD has the potential to screen for genetic issues unrelated to medical necessity, such as intelligence and beauty, and against negative traits such as disabilities. The medical community has regarded this as a counterintuitive and controversial suggestion.[38] The prospect of a "designer baby" is closely related to the PGD technique, creating a fear that increasing frequency of genetic screening will move toward a modern eugenics movement.[39] On the other hand, a principle of procreative beneficence is proposed, which is a putative moral obligation of parents in a position to select their children to favor those expected to have the best life.[40] An argument in favor of this principle is that traits (such as empathy, memory, etc.) are "all-purpose means" in the sense of being of instrumental value in realizing whatever life plans the child may come to have.[41]

In 2006 three percent of PGD clinics in the US reported having selected an embryo for the presence of a disability.[42] Couples involved were accused of purposely harming a child. This practice is notable in dwarfism, where parents intentionally create a child who is a dwarf.[42] In the selection of a saviour sibling to provide a matching bone marrow transplant for an already existing affected child, there are issues including the commodification and welfare of the donor child.[43]

By relying on the result of one cell from the multi-cell embryo, PGD operates under the assumption that this cell is representative of the remainder of the embryo. This may not be the case as the incidence of mosaicism is often relatively high.[44] On occasion, PGD may result in a false negative result leading to the acceptance of an abnormal embryo, or in a false positive result leading to the deselection of a normal embryo.

Another problematic case is the cases of desired non-disclosure of PGD results for some genetic disorders that may not yet be apparent in a parent, such as Huntington disease. It is applied when patients do not wish to know their carrier status but want to ensure that they have offspring free of the disease. This procedure can place practitioners in questionable ethical situations, e.g. when no healthy, unaffected embryos are available for transfer and a mock transfer has to be carried out so that the patient does not suspect that he/she is a carrier. The ESHRE ethics task force currently recommends using exclusion testing instead. Exclusion testing is based on a linkage analysis with polymorphic markers, in which the parental and grandparental origin of the chromosomes can be established. This way, only embryos are replaced that do not contain the chromosome derived from the affected grandparent, avoiding the need to detect the mutation itself.[citation needed]

Intersex people are born with physical sex characteristics that don't meet stereotypical binary notions of male or female; such traits are stigmatized for largely cosmetic reasons.[45] PGD allows discrimination against those with with intersex traits. Georgiann Davis argues that such discrimination fails to recognize that many people with intersex traits led full and happy lives.[46]Morgan Carpenter highlights the appearance of several intersex variations in a list by the Human Fertilisation and Embryology Authority of "serious" "genetic conditions" that may be de-selected in the UK, including 5 alpha reductase deficiency and androgen insensitivity syndrome, traits evident in elite women athletes and "the world's first openly intersex mayor".[47]Organisation Intersex International Australia has called for the Australian National Health and Medical Research Council to prohibit such interventions, noting a "close entanglement of intersex status, gender identity and sexual orientation in social understandings of sex and gender norms, and in medical and medical sociology literature".[48]

In 2015, the Council of Europe published an Issue Paper on Human rights and intersex people, remarking:

Some religious organizations disapprove of this procedure. The Roman Catholic Church, for example, takes the position that it involves the destruction of human life.[50] and besides that, opposes the necessary in vitro fertilization of eggs as contrary to Aristotelian principles of nature.[citation needed] The Jewish Orthodox religion believes the repair of genetics is okay, but they do not support making a child that is genetically fashioned[37]

A meta-analysis that was performed indicates research studies conducted in PGD underscore future research. This is due to positive attitudinal survey results, postpartum follow-up studies demonstrating no significant differences between those who had used PGD and those who conceived naturally, and ethnographic studies which confirmed that those with a previous history of negative experiences found PGD as a relief. Firstly, in the attitudinal survey, women with a past history of infertility, pregnancy termination, and repeated miscarriages reported having a more positive attitude towards preimplantation genetic diagnosis. They were more accepting towards pursuing PGD. Secondly, likewise to the first attitudinal study, an ethnographic study conducted in 2004 found similar results. Couples with a past history of multiple miscarriages, infertility, and an ill child, felt that preimplantation genetic diagnosis was a viable option. They also felt more relief; "those using the technology were actually motivated to not repeat pregnancy loss".[51] In summary, although some of these studies are limited due to their retrospective nature and limited samples, the study's results indicate an overall satisfaction of participants for the use of PGD. However, the authors of the studies do indicate that these studies emphasize the need for future research such as creating a prospective design with a valid psychological scale necessary to assess the levels of stress and mood during embryonic transfer and implantation.[51]

Prior to implementing the Assisted Human Reproduction Act (AHR) in 2004, PGD was unregulated in Canada. The Act banned sex selection for non-medical purposes.[52]

Due to 2012s national budget cuts, the AHR was removed. The regulation of assisted reproduction was then delegated to each province.[53] This delegation provides provinces with a lot of leeway to do as they please. As a result, provinces like Quebec, Alberta and Manitoba have put almost the full costs of IVF on the public healthcare bill.[54] Dr. Santiago Munne, developer of the first PGD test for Downs Syndrome and founder of Reprogenetics, saw these provincial decisions as an opportunity for his company to grow and open more Reprogenetics labs around Canada. He dismissed all controversies regarding catalogue babies and states that he had no problem with perfect babies.[55]

Ontario, however, has no concrete regulations regarding PGD. Since 2011, the Ministry of Children and Youth Services in Ontario advocates for the development government-funded safe fertility education, embryo monitoring and assisted reproduction services for all Ontarians. This government report shows that Ontario not only has indefinite regulations regarding assisted reproduction services like IVF and PGD, but also does not fund any of these services. The reproductive clinics that exist are all private and located only in Brampton, Markham, Mississauga, Scarborough, Toronto, London and Ottawa.[56] In contrast, provinces such as Alberta and Quebec not only have more clinics, but have also detailed laws regarding assisted reproduction and government funding for these practices.

Before 2010, the usage of PGD was in a legal grey area.[57] In 2010, the Federal Court of Justice of Germany ruled that PGD can be used in exceptional cases.[57] On 7 July 2011, the Bundestag passed a law that allows PGD in certain cases. The procedure may only be used when there is a strong likelihood that parents will pass on a genetic disease, or when there is a high genetic chance of a stillbirth or miscarriage.[8] On 1 February 2013, the Bundesrat approved a rule regulating how PGD can be used in practice.[57]

In Hungary, PGD is allowed in case of severe hereditary diseases (when genetic risk is above 10%). The preimplantation genetic diagnosis for aneuploidy (PGS/PGD-A) is an accepted method as well. It is currently recommended in case of multiple miscarriages, and/or several failed IVF treatments, and/or when the mother is older than 35 years.[58] Despite being an approved method, PGD-A is available at only one Fertility Clinic in Hungary.[59]

In India, Ministry of Family Health and Welfare, regulates the concept under - "The Pre-Conception and Prenatal Diagnostic Techniques (Prohibition of Sex Selection) Act, 1994". The Act was further been revised after 1994 and necessary amendment were made are updated timely on the official website of the Indian Government dedicated for the cause.[60]

In South Africa, where the right to reproductive freedom is a constitutionally protected right, it has been proposed that the state can only limit PGD to the degree that parental choice can harm the prospective child or to the degree that parental choice will reinforce societal prejudice.[61]

The preimplantation genetic diagnosis is allowed in Ukraine and from November 1, 2013 is regulated by the order of the Ministry of health of Ukraine "On approval of the application of assisted reproductive technologies in Ukraine" from 09.09.2013 787. [3].

In the UK, assisted reproductive technologies are regulated under the Human Fertilization and Embryology Act (HFE) of 2008. However, the HFE Act does not address issues surrounding PGD. Thus, the HFE Authority (HFEA) was created in 2003 to act as a national regulatory agency which issues licenses and monitors clinics providing PGD. The HFEA only permits the use of PGD where the clinic concerned has a licence from the HFEA and sets out the rules for this licensing in its Code of Practice ([4]). Each clinic, and each medical condition, requires a separate application where the HFEA check the suitability of the genetic test proposed and the staff skills and facilities of the clinic. Only then can PGD be used for a patient.

The HFEA strictly prohibits sex selection for social or cultural reasons, but allows it to avoid sex-linked disorders. They state that PGD is not acceptable for, "social or psychological characteristics, normal physical variations, or any other conditions which are not associated with disability or a serious medical condition." It is however accessible to couples or individuals with a known family history of serious genetic diseases.[62] Nevertheless, the HFEA regards intersex variations as a "serious genetic disease", such as 5-alpha-reductase deficiency, a trait associated with some elite women athletes.[63] Intersex advocates argue that such decisions are based on social norms of sex gender, and cultural reasons.[64]

No uniform system for regulation of assisted reproductive technologies, including genetic testing, exists in the United States. The practice and regulation of PGD most often falls under state laws or professional guidelines as the federal government does not have direct jurisdiction over the practice of medicine. To date, no state has implemented laws directly pertaining to PGD, therefore leaving researchers and clinicians to abide to guidelines set by the professional associations. The Center for Disease Control and Prevention (CDC) states that all clinics providing IVF must report pregnancy success rates annually to the federal government, but reporting of PGD use and outcomes is not required. The American Society for Reproductive Medicine (ASRM) states that, "PGD should be regarded as an established technique with specific and expanding applications for standard clinical practice." They also state, "While the use of PGD for the purpose of preventing sex-linked diseases is ethical, the use of PGD solely for sex selection is discouraged."[65]

In a study of 135 IVF clinics, 88% had websites, 70% mentioned PGD and 27% of the latter were university- or hospital-based and 63% were private clinics. Sites mentioning PGD also mentioned uses and benefits of PGD far more than the associated risks. Of the sites mentioning PGD, 76% described testing for single-gene diseases, but only 35% mentioned risks of missing target diagnoses, and only 18% mentioned risks for loss of the embryo. 14% described PGD as new or controversial. Private clinics were more likely than other programs to list certain PGD risks like for example diagnostic error, or note that PGD was new or controversial, reference sources of PGD information, provide accuracy rates of genetic testing of embryos, and offer gender selection for social reasons.[66]

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Gene therapy | Cancer Research UK

October 22nd, 2015 11:41 am

Researchers are looking at different ways of using gene therapy, including

Some types of gene therapy aim to boost the body's natural ability to attack cancer cells. Our immune system has cells that recognise and kill harmful things that can cause disease, such as cancer cells.

There are many different types of immune cell. Some of them produce proteins that encourage other immune cells to destroy cancer cells. Some types of therapy add genes to a patient's immune cells to make them better at finding or destroying particular types of cancer. There are a few trials using this type of gene therapy in the UK.

Some gene therapies put genes into cancer cells to make the cells more sensitive to particular treatments such as chemotherapy or radiotherapy. This type of gene therapy aims to make the other cancer treatments work better.

Some types of gene therapy deliver genes into the cancer cells that allow the cells to change drugs from an inactive form to an active form. The inactive form of the drug is called a pro drug.

After giving the carrier containing the gene, the doctor gives the patient the pro drug. The pro drug may be a tablet or capsule that you swallow, or you may have it into the bloodstream.

The pro drug circulates in the body and doesn't harm normal cells. But when it reaches the cancer cells, the gene activates it and the drug kills the cancer cells.

Some gene therapies block processes that cancer cells use to survive. For example, most cells in the body are programmed to die if their DNA is damaged beyond repair. This is called programmed cell death or apoptosis. But cancer cells block this process so they don't die even when they are supposed to. Some gene therapy strategies aim to reverse this blockage. Doctors hope that these new types of treatment will make the cancer cells die.

Some viruses infect and kill cells. Researchers are working on ways to change these viruses so that they only target and kill cancer cells, leaving healthy cells alone. This sort of treatment uses the viruses to kill cancer cells directly rather than to deliver genes. So it is not cancer gene therapy in the true sense of the word. But doctors sometimes refer to it as gene therapy.

One example of this type of research uses the cold sore virus (herpes simplex virus). The changed virus is called Oncovex. It has been tested in early clinical trials for advanced melanoma, pancreatic cancer and head and neck cancers.

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Alabama Ortopaedics & Sports Medicine Associates, P. C.

October 22nd, 2015 9:42 am

Welcome to Alabama Orthopaedic & Sports Medicine Associates, P.C.

Alabama Orthopaedic & Sports Medicine Associates. P.C is a purpose-built facility for Sports Medicine and General Orthopaedic care servicing Montgomery and entire Alabama. Dr. Kenneth Taylor, our director is a Board Certified Orthopaedic Surgeon specializing in Sports Medicine and Family Orthopaedics.

Our website features interactive presentations on the anatomy of Hip and Knee joints, Total Hip Replacement, Hip Resurfacing, Revision Hip Replacement, Knee Arthroscopy, ACL Reconstruction Unicondylar Knee Replacement, Revision Knee Replacement and much more. Website also features topics on Shoulders, hand, wrist, back & spine, foot & ankle, sports medicine and much more.

The information in this website is provided to reinforce the advice you receive from your own doctors and is not intended to replace discussions with your doctor. We hope you find our website Informative and Interactive to meet your inquiries.

Thank you for visiting us.

Click here to find out more about us.

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Stem Cell FAQ

October 20th, 2015 3:49 am

Some of the promise of stem cell therapy has been realized. A prime example is bone marrow transplantation. Even here, however, manyproblems remain to be solved.

Challenges facing stem cell therapy include the following:

Adult stem cells Tissue-specific stem cells in adult individuals tend to be rare. Furthermore, while they can regenerate themselves in an animal or person they are generally very difficult to grow and to expand in the laboratory. Because of this, it is difficult to obtain sufficient numbers of many adult stem cell types for study and clinical use. Hematopoietic or blood-forming stem cells in the bone marrow, for example, only make up one in a hundred thousand cells of the bone marrow. They can be isolated, but can only be expanded a very limited amount in the laboratory. Fortunately, large numbers of whole bone marrow cells can be isolated and administered for the treatment for a variety of diseases of the blood. Skin stem cells can be expanded however, and are used to treat burns. For other types of stem cells, such as mesenchymal stem cells, some success has been achieved in expanding the cellsin vitro, but application in animals has been difficult. One major problem is the mode of administration. Bone marrow cells can be infused in the blood stream, and will find their way to the bone marrow. For other stem cells, such as muscle stem cells, mesenchymal stem cells and neural stem cells, the route of administration in humans is more problematic. It is believed, however, that once healthy stem cells find their niche, they will start repairing the tissue. In another approach, attempts are made to differentiate stem cells into functional tissue, which is then transplanted. A final problem is rejection. If stem cells from the patients are used, rejection by the immune system is not a problem. However, with donor stem cells, the immune system of the recipient will reject the cells, unless the immune system is suppressed by drugs. In the case of bone marrow transplantation, another problem arises. The bone marrow contains immune cells from the donor. These will attack the tissues of the recipient, causing the sometimes deadly graft-versus-host disease.

Pluripotent stem cells All embryonic stem cell lines are derived from very early stage embryos, and will therefore be genetically different from any patient. Hence, immune rejection will be major issue. For this reason, iPS cells, which are generated from the cells of the patient through a process of reprogramming, are a major breakthrough, since these will not be rejected. A problem however is that many iPS cell lines are generated by insertion of genes using viruses, carrying the risk of transformation into cancer cells. Furthermore, undifferentiated embryonic stem cells or iPS cells form tumors when transplanted into mice. Therefore, cells derived from embryonic stem cells or iPS cells have to be devoid of the original stem cells to avoid tumor formation. This is a major safety concern.

A second major challenge is differentiation of pluripotent cells into cells or tissues that are functional in an adult patient and that meet the standards that are required for 'transplantation grade' tissues and cells.

A major advantage of pluripotent cells is that they can be grown and expanded indefinitely in the laboratory. Therefore, in contrast to adult stem cells, cell number will be less of a limiting factor. Another advantage is that given their very broad potential, several cell types that are present in an organ might be generated. Sophisticated tissue engineering approaches are therefore being developed to reconstruct organs in the lab.

While results from animal models are promising, the research on stem cells and their applications to treat various human diseases is still at a preliminary stage. As with any medical treatment, a rigorous research and testing process must be followed to ensure long-term efficacy and safety.

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Center for Personalized Medicine | Roswell Park Cancer …

October 20th, 2015 3:49 am

TheCenter for Personalized Medicine (CPM)is helping doctorsdeliver the best possible patient care by developing laboratory testing solutions that accurately, quickly and deeply inform cliniciansof the latest treatment and careoptions based on their patients'unique tumor profiles.

The CPM brings together a multidisciplinary expert teamin the areas of oncology, pathology, laboratory and information technology, bioinformatics, medical informaticsand health care delivery to perform cutting edge research and createthe highest quality, evidence-based genomic tests available using advanced molecular diagnostic technologies. The team is developing a comprehensive OmniSeq Programto implement personalized genomic medicine in routine cancer care.

This is the future of medicine, not just in oncology but across all diseases. Candace Johnson, PhD, President & CEO of RPCI

In cancer, personalized medicine uses advanced laboratory technologies to detect alterations in tumor DNA to match a patient to the treatments that will work best for their specific tumor, help avoid unnecessary treatment, find out how well treatment is working over time or make a prognosis.

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Genetics Articles – Bodybuilding.com

October 20th, 2015 3:48 am

By: Mike Mahler

Research now confirms what common sense has always told us: Happy people live longer, enjoy healthier lives, achieve more success... Look deep to see if you are happy or not and learn what genetics have to do with it.

Date Added: Dec 18, 2007

By: Vince Del Monte

Skinny guys must play by different rules and figuring out a workout routine can be a source of confusion and frustration. Here are six reasons skinny guys must focus on strength and a sample training program with notes. Try it now for great success!

Date Added: Jan 2, 2007

By: Babyboomers

Baby boomers that hit the gym and demand physiques for health, wellness, longevity, and yes, creating and maintaining an attractive body, want to make the most of their time working out. So, how can we maximize our genetics to speed up those results?

Date Added: May 1, 2003

By: Matt Danielsson

Genetics is a popular scapegoat for lazy people. It is very convenient, and there's no one around to prove that this is the sole purpose of fitness limitations for some people! Learn more here ...

Date Added: Nov 7, 2002

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Genetics Articles - Bodybuilding.com

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Death and Stem Cell Transplant – Posts about Drugs, Side …

October 20th, 2015 3:46 am

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but so far there is a huge rejection factor and the death ra...

" rea-from what i have read the donor stem cell transplant is the only "cure" but so far there is a huge rejection factor and the death rate was too high for them to continue this as... "

ssage. I have found out that the death rate for stem cell tr...

" ...for your message. I have found out that the death rate for stem cell transplants is less than 1%. It's ...the process. I have been taking vitamin E and Beta Carotene. I'll... "

time of her death (unfortunately suicide). I also talked...

" ...type of BC than I do and had a stem cell transplant at UCLA over 10 years ago and was NED at the time of her death (unfortunately suicide). I also talked to someone who had... "

and had great success with it. The rate of death i...

" ...heard a woman here in BC speak about her stem cell transplant. She is 3 years post treatment and had great success with it. The rate of death is mostly attributed to liver problems brought on by... "

on the death of your mother. My mother died just...

" ...all, my condolences on the death of your mother. My mother died just over 9 years ago of GBM, a primary brain cancer. ...for any other Lymphoma included Stem Cell Transplant for very aggressive forms of... "

the time of his death he was being treated in Boston for...

" ...4/20/13 from flu after a stem cell transplant; M, 57 yrs. Source: http://obits.mlive.com/obituaries/an...37#fbLoggedOut ...2013. At the time of his death he was being treated in ...He had recently received a... "

more complications and a higher death rate. The mi...

" ...Hutchinson Cancer Research Center said: "Allogeneic stem cell transplants have the advantage of a ...immune reconstitution and "graft-versus-host disease", have more complications and a higher... "

did not cause her death.Kellie van Meurs suffered from a ra...

" ...say it did not cause her death. Kellie van Meurs suffered from ...to undergo an autologous hematopoietic stem cell transplant (HSCT) under the care of ...cells after high-dose chemotherapy. Ms van Meurs was... "

the UK has been suspended following the death of a patient,...

" ...in the bowel. Also, with Stem Cell Transplant, you absolutely cannot have any ...trial in the UK has been suspended following the death of a patient, so it looks... "

rd year. Getting over the death of a parent is difficult en...

" ...that you have had such a hard year. Getting over the death of a parent is difficult enough without having to cope ...joining. My husband had his stem cell transplant January 2011 and although he... "

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deaths of 3 politicians – Knoepfler Lab Stem Cell Blog

October 20th, 2015 3:46 am

The Philippine Medical Association (PMA) is reportedly(article fromABS-CBN News) investigating the recent deaths of 3 prominent politicians due to stem cell therapies via stem cell tourism in Germany at an as yet unidentified clinic.

The names of the politicians are unknown, but strangely enough today theres another separate article on stem cells from the Philippine Daily Inquirerthat mentions 3 politicians who have received stem cell treatments:

A number of politicians have been reported to have used stem cell therapy, including former President Joseph Estrada, Sen. Juan Ponce Enrile and former Sen. Ernesto Maceda.

Of course these men may not be the politicians referred to in the ABS-CBN piece. Maceda was quoted:

I am now convinced that my stem cell therapy is effective and thats the reason why Ive been able to keep up with the rigorous campaign schedule, he said. I feel 20 years younger.

In the past the German stem cell clinic X-cell was notorious for being linked to a babys death.

PMA president Dr. Leo Olarte commented on the more recent case:

They were given stem cells from sheep, rabbits and animals. They died after one year, they had late hypersensitivity reaction, he said.

It sounds like a very horrible situation. More information is needed to get the bottom of this.

The ABS-CBN Foundation, presumably the outfit responsible for ABS-CBN News that reported the 3 politician deaths, is an advocacy group of some kind in the Philippines that works with Olarte ( see him with Gina Lopez, Managing Director of ABS-CBN in the pic below).

Stem cells are generating a lot of buzz in the Philippines and apparently stem cell interventions of various kinds are becoming more common including a supposed aphrodisiac stem cell potion called Soup. No. 7. Thus, efforts to reign in dangerous stem cell interventions there are very important. At the same time some in the Philippines such as Olarte want to promote stem cell tourism as well it seems. Its a fine line to walk

For example, in commenting toABS-CBN News in the same article as about the German deaths, Olarte seems to be playing up the state of stem cell interventions in that country more generally:

Olarte said the country already has experts, who are members of the Philippine Society for Stem Cell Medicine (PSSCM), competent to perform the treatment in the Philippines.

We have more or less 400 specialists, he said, even noting that the stem cell treatment in the country is much cheaper by 50% than what is being sold abroad.

Im not so convinced that even these supposedly okay stem cell treatments promoted by Olarte are proven safe or effective either even if they are cheaper.

The deaths of the three politicians in Germany are disturbing news and highlight the care that must be taken in regulating stem cell interventions to keep patients safe.

. Bookmark the

.

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Stem Cell Therapy in Switzerland Life Cell Injections …

October 20th, 2015 3:45 am

Stem Cell Therapy Plus is also called Live Cell Therapy or Regenerative Medicine.

Anecdotal evidence shows that through the usage of Stem Cell Therapy Plus, improvements can be seen in the following cases of degenerative diseases:

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Stem cells are cells with the ability to divide for indefinite periods in culture and to give rise to specialized cells. Stem cells have the remarkable potential to develop into many different cell types. In addition, in many tissues they serve as a sort of internal repair system, dividing essentially without limit to replenish other cells.

When a stem cell divides, each new cell has the potential either to remain a stem cell or become another type of cell with a more specialized function, such as a muscle cell, a nerve cell, or a brain cell.

Stem Cell Supplements are developed based on the merits of stem cells and they are applied for degenerative diseases treatments and to stimulate the formation of all the different tissues of the body: muscle, cartilage, tendon, ligament, bone, blood, nerve, organs, etc.

Stem Cell Supplements bring essential anti-ageing, health & beauty benefits by providing necessary elements to the body to improve cellular regeneration, organ rejuvenation and tissue healing.

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Howard University National Human Genome Center

October 18th, 2015 7:42 pm

The molecular genetics research interests are in human population genetics, anthropological genetics, immunogenetics, and the genetics of complex diseases. Ultimate goals surround elucidating questions of human variation, the evolutionary history of genes within populations and how these gene histories are involved in the etiology of complex diseases. While the laboratory's research goals have shared consequences for all humanity, specific interests focus on populations of African ancestry.

Operational Objectives:

1. Develop a SNP database for mapping functional mutations linked to diseases common in African peoples.

2. Utilization of evolutionary history of candidate genes to identify polymorphisms that are associated with diseases.

3. Exploit the linkage disquilibrium generated by admixture in the African American population for gene mapping.

CURRENT RESEARCH PROJECTS

The biological transition of enslaved Africans-to-African Americans is marked by the transition of environmental stresses from Africa to those in the Americas, and to a lesser extent, by The incorporation of non-African genes into the African American gene pool. The transition from the various African environments of origin to the diverse American environments is far from insignificant. The American environment imposed new selective pressures on the Africans. These selective pressures may have favored certain genes while eliminating others. This evolutionary hypothesis has been a controversial explanation for the high incidence of diseases such as hypertension in African Americans. Thus, African American biology has been significantly shaped by periods of intermixture creating high heterogeneity, and selective pressures emanating from the unique and particularly adverse social, economic, and political conditions in the US. All of these factors might contribute to the high incidence of diseases with a significant genetic component such as type 2 diabetes, asthma, hereditary cancer (prostate, breast and lung), and hypertension in African Americans.

Prostate cancer is the most common solid malignancy among men in the United States. African American men have the highest incidence of prostate cancer compared to other ethnic groups. This cohort also appears to present more commonly at an advanced stage with aggressive histology and increased cancer-related mortality. Thus, there is a critical need to explore the etiologic pathways (genetic and environmental factors) that contribute to this disparity. In on of our projects "Genes, environment and prostate cancer in populations of African descent" we seek to understand the relative contribution of allelic variations of candidate genes and environmental factors to determine an individuals risk of prostate cancer. The work is geared towards the African American population, for whom genomic studies are limited. African Americans share a common genetic background with West Africans yet vastly different environments. Comparative genetic and epidemiological research on the two populations reveal potential risk factors. This project will provide a better understanding of gene-gene (epistasis), and gene-environment effects on prostate cancer. At research sites in Washington, DC, Chicago, Illinois, and Benin City, Nigeria the goals of the project are to (1) recruit a well characterized cohort of 1200 cases and controls and collect blood for biochemical and molecular assays, along with diet and other environmental information; (2) use state of the art DHPLC technology to provide a formal evaluation of single nucleotide polymorphism (SNP) variation in 22 candidate genes for prostate cancer (androgen associated genes, apoptosis related genes, and diet related genes); (3) construct a web-based database of the SNPs discovered; (4) determine if haplotypic variation in candidate genes accounts for phenotypic variation in prostate cancer, prostate specific antigen (PSA) levels, and disease progression; and (5) assess whether gene-gene and gene-environment interactions exist by examining if prostate cancer risk is modified after stratification of genetic and/or environmental factors. This is the first study which examines SNP markers within the proposed candidate genes, diet, and other environmental variables in clinically evaluated African and African Americans and which evaluates their relative interactions and contribution, if any, to prostate cancer.

In another project, "Haplotype analyses of X chromosome variants: population genetics and implications for prostate cancer" the goals are to (1) provide a formal evaluation of X chromosome variation and linkage disequilibrium in the African American population, (2) determine the relationship of microsatellite alleles (CAG and GGN repeats) within the androgen receptor with the risk for prostate cancer and (3) exploit the evolutionary history of X chromosome haplotypes in order to determine if differences in X chromosome haplotypes account for phenotypic variation in prostate cancer and prostate specific antigen (PSA) levels.

While the molecular genetic research has shared consequences for all humanity, our specific interests focus on populations of African ancestry. Other areas of immediate interest are molecular evolutionary genetics, and biological anthropology. In another project, "the genetics of human pigmentation," we seek to understand the relative contribution of allelic variations of candidate genes responsible for variation in human pigmentation. Pigmentation is a classic anthropological trait that has been studied objectively using reflectance spectroscopy for over 50 years. Skin pigmentation is likely the trait that shows the largest degree of variability among human populations. That there are such dramatic differences in the levels of skin pigmentation among human populations is almost definite evidence for the action of natural selection. The identification of the genes that determine normal within-population variation in pigmentation and differences between populations is the first essential step in the elucidation of the molecular history of human pigmentation. The goals of this project are to (1) develop a database and sample collection that will allow for the delineation of the genes that determine pigmentation, and (2) genotype these individuals for a number of candidate genes to identify those which determine natural variation in pigmentation.

Mutation analyses of BRCA1 and BRCA2. We are analyzing the breast cancer predisposing genes, BRCA1 and BRCA2, for germline mutations in African American families at high-risk for hereditary breast cancer. Patients are considered high-risk if they have a family history of the disease, early onset breast cancer, bilateral breast cancer, breast and ovarian cancer, or a male affected with breast cancer. The entire BRCA1 and BRCA2 coding and flanking intron regions are being examined for mutation detection. In preliminary studies of BRCA1 using the technique of single strand conformation polymorphism, we identified 11 different germline mutations/ variations in 7 patients from 45 high-risk families. Two pathogenic, protein-truncating mutations were detected in exon 11. A ten base pair tandem duplication, 943ins10, was present in a woman with breast and ovarian cancer whose first-degree relatives had prostate cancer. A four base pair deletion, 3450del4, was detected in a breast cancer patient with five cases of breast cancer in the family; two of the proband's sisters with breast cancer also carried the same mutation. Four amino acid substitutions (Lys1183Arg, Leu1564Pro, Gln1785His, and Glu1794Asp) and four nucleotide substitutions in intron 22 (IVS22+78 C/A, IVS22+67 T/C, IVS22+8 T/A and IVS22+7 T/C) were observed in patients and not in control subjects. One early onset breast cancer patient carried five distinct BRCA1 variations, two amino acid substitutions and three substitutions in intron 22. An amino acid substitution in exon 11, Ser1140Gly, was identified in 3 different unrelated patients and in 6 of 92 control samples. The latter probably represents a benign polymorphism. BRCA1 and BRCA2 analyses for the detection of mutations are ongoing.

Genetic variation in asthma. Asthma families collected by HU investigators were part of the Collaborative Study on the Genetics of Asthma (CSGA) genome-wide search for asthma susceptibility loci in ethnically diverse populations. Asthma is an inflammatory airways disease associated with intermittent respiratory symptoms, bronchial hyper-responsiveness (BHR) and reversible airflow obstruction and is phenotypically heterogeneous. Patterns of clustering and segregation analyses in asthma families have suggested a genetic component to asthma. Previous studies reported linkage of BHR and atopy to chromosomes 5q, 6p, 11q, 14q, and 12q. One genome-wide search in atopic sib pairs had been reported, however, only 12% of their subjects had asthma. The CSGA conducted a genome-wide search in 140 families with > or = 2 asthmatic sibs, from three different populations and reported evidence for linkage to six novel regions: 5p15 (P = 0.0008) and 17p11.1-q11.2 (P = 0.0015) in African Americans; 11p15 (P = 0.0089) and 19q13 (P = 0.0013) in Caucasians; 2q33 (P = 0.0005) and 21q21 (P = 0.0040) in Hispanics. Evidence for linkage was also detected in five regions previously reported to be linked to asthma-associated phenotypes: 5q23-31 (P = 0.0187), 6p21.3-23 (P = 0.0129), 12q14-24.2 (P = 0.0042), 13q21.3-qter (P = 0.0014), and 14q11.2-13 (P = 0.0062) in Caucasians and 12q14-24.2 (P = 0.0260) in Hispanics.

Dermatophagoides pteronyssinus (Der p) is one of the most frequently implicated allergens in atopic diseases. Although HLA could play an important role in the development of the IgE response to the Der p allergens, genetic regulation by non-HLA genes influences certain HLA-associated IgE responses to complex allergens. To clarify genetic control for the expression of Der p-specific IgE responsiveness, a genome-wide search was conducted for genes influencing Der p-specific IgE antibody levels by using 45 Caucasian and 53 African American families ascertained as part of the Collaborative Study on the Genetics of Asthma (CSGA). Specific IgE antibody levels to the Der p crude allergen and to the purified allergens Der p 1 and Der p 2 were measured. Multipoint, nonparametric linkage analysis of 370 polymorphic markers was performed with the GENEHUNTER program. The best evidence of genes controlling specific IgE response to Der p was obtained in 2 novel regions: chromosomes 2q21-q23 (P = .0033 for Caucasian subjects) and 8p23-p21 (P = .0011 for African American subjects). Three regions previously proposed as candidate regions for atopy, total IgE, or asthma also showed evidence for linkage to Der p- specific IgE responsiveness: 6p21 (P = .0064) and 13q32-q34 (P = 0.0064) in Caucasian subjects and 5q23-q33 (P = 0.0071) in African American subjects. No single locus generated overwhelming evidence for linkage in terms of established criteria and guidelines for a genome-wide screening, which supports previous assertions of a heterogeneous etiology for Der p-specific IgE responsiveness. Two novel regions, 2q21-q23 and 8p23-p21, that were identified in this study merit additional study. In addition genome-wide screening was conducted for genes influencing Dermatophagoides pteronyssinus-specific IgE responsiveness as a part of the Collaborative Study on the Genetics of Asthma (CSGA). Evidence for linkage was found in some regions, including chromosomes 5131-q33 and 11q13 in African American families. Plans are underway to initiate an international study of the genetics of asthma in collaboration with medical scientists in Ghana and investigators at the NHGC. These investigations will target regions where associations with specific IgE responses have been indicated in African Americans.

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DEVELOPING PROJECTS

Characterization of African American Ancestral HLA Haplotypes in West Africa.

An important area of investigation at the NHGC is the inclusion of evolutionary history of genes as a diagnostic probe in tracing the history of disease in a population.

This project builds upon the foundation of research on the genetics of complex diseases common in African Americans already established with the NHGRI in partnership with the NIH Office of Research on Minority Health. More specifically, it would build upon African American Diabetes mellitus (AADM) an international human gnome research initiative to map genes for type 2 diabetes in ancestral populations of African Americans. Because of the overlap in clinical phenotype of some subsets of types 1 and 2 diabetes, the rationale for this study is that characterization of HLA class II haplotypes in the west African study population may assist in refining the clinical phenotype of a subset of type 2 diabetes patients.

The association of HLA class II genes with susceptibility to type 1 diabetes is well documented in many populations. In African Americans type 1 diabetes patients, unique HLA class II polymorphisms have been instructive in determining risk assessment of closely linked HLA loci. We have reported the association of a unique HLA-DR3 haplotype in African Americans that appears to be associated with resistance to type 1 diabetes. The higher frequency of this haplotype among controls raises questions about the frequency of this haplotype in west African ancestral populations of African Americans.

The long range goal of research at the NHGC is to improve the health status of African Americans through research on human DNA sequence variation and to apply the knowledge gained to better understand the biomedical significance of gene-based differences already known to exist among populations in the immune response to organ transplants; sensitivity to drugs; influence of environment on health, and susceptibility to complex diseases, such as cancer and diabetes.

The research goals of the molecular genetics component are predicated upon the two broad hypotheses of population variation in DNA polymorphic markers used to map genes and the correlation of population-based variation in DNA polymorphic markers with disease.Studies of human leukocyte antigen (HLA) polymorphisms and other genetic polymorphic systems have consistently shown greater genetic variability in African populations. The biomedical implications of population-based variation in HLA genes are seen in association in the arena of clinical transplantation, where decisions regarding the distribution of limited donor organs must be informed by science and balanced by the ethical concerns of the larger society.

The goal of this study is to define HLA alleles and haplotypes in the study population and determine whether allele and haplotype frequencies in diabetics differ from controls. If a difference is found, the implication of HLA associations with the clinical phenotype of type 2 diabetes will be investigated. The study of HLA haplotypes in west African ancestral populations of African Americans will help identify HLA polymorphisms that are common in this population.Since HLA has been associated with a variety of autoimmune diseases, the results of this study should not only be useful in the analysis of HLA haplotypes in type 2 diabetes, but also informative for population-based HLA evolutionary studies.

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Linkage disequilibrium (LD) in African Americans.

Linkage disequilibrium is a population genetic phenomenon that has been useful for gene mapping efforts. LD can usually be found in populations for genes that are tightly (close genetic distance) linked, and can be generated by mutation, selection, or admixture of populations with different allele frequencies. Generally, disequilibrium is dependent on population size, time (generations), and distance between genetic markers. Normally, the greater the distance between markers, the faster the decay of disequilibrium. The nonrandom association of alleles at different genetic loci can be measured by a variety of linkage disequilibrium measures.

Within the African American population one would expect to find short genomic areas of tight LD, a legacy of this population's roots in the antiquity of African human history, together with large areas of LD, a legacy of more recent admixture with Europeans and Native Americans. Assessment of the level of genetic variation and LD in the African American population is important for several reasons. It will allow us to better understand the mechanisms responsible for the creation and maintenance of LD over genomic regions.

This better understanding will aid in the mapping of genes responsible for complex diseases. We expect to observe a diverse pattern of LD among the African American chromosomes when compared to other populations. While the pattern observed among African Americans is not restricted to the population, it is observed at higher frequency than others with diffferent populatioin histories. African American chromosomes with ancestry in West Africa should exhibit closely linked disequilibrium while chromosomes with ultimate ancestry from Europe will reveal broader regions of disequilibrium. What this study will do is assess patterns and level of LD among chromosomal regions within the African American population.

Significance of the African American population for gene mapping

As stated above, LD can be generated by admixture between divergent populations. Thus, a genetic consequence of the unique population history of African Americans is increased LD. We caution that much of the disequilibrium may not actually be due to genetic linkage, but are artifacts of divergent allele frequencies in the parental populations. However, it is expected that linked loci will also show significant disequilibrium in the African American population. The analysis of LD between marker and disease loci has proven to be a powerful tool for positional cloning of disease genes.

When a disease or trait manifests variation between populations, admixed populations provide a population based approach to evaluate the relative importance of genetic factors. A variety of statistical genetic methods for disease studies exploit the LD created by admixture. These include the Transmission Disequilibrium Test (TDT) and Mapping by Admixture Linkage Disequilibrium (MALD). An important assumption of many of these methods is that the ancestry of alleles at each locus be assigned to one of the two founding populations. The assignment of alleles to parent populations is problematic at times, however as more informative genetic markers are found and more individuals and populations sampled, the statistical power to assign alleles increases.

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RESOURCES

The Molecular Genetics Laboratory in the National Human Genome Center is newly renovated and is located on the 6th floor of the Howard University Cancer Center. This facility is approximately 7,500 square feet. There are two large laboratories (~1500 sq. ft. each), a DNA sequencing and genotyping room (~800 sq. ft.), two cold rooms, dark room, and a walk-in freezer. The laboratory space is equipped with benches, tables, sinks, distilled water, fume hoods and separate areas for tissue culture, PCR, and radioisotope use.

Four Pentium III NT Workstations (400-500 mHz) and four Power Macintosh G4's provide the computational hardware for the Molecular Genetics laboratory. The eight computers are networked together via the Genome Center NT server with the 5 computers operating three ABI 377 DNA sequencers and two DNA Wave Machines in addition to the computers used by the Genetic Epidemiology and Statistical Genetics units. The molecular genetics laboratory contains all the standard equipment necessary for large-scale, high throughput molecular analysis of DNA variation. These items include centrifuges, waterbaths, gel electrophoresis apparatus, pipettes, glassware, balances, etc. The laboratory also has two Transgenomics DNA Wave machines for SNP detection using dHPLC. The genotyping room contains three ABI 377 automated sequencers, ten Perkin Elmer 9700 thermocyclers, and the PSQ 96 Pyrosequencing platform for SNP genotyping.

Molecular genetics laboratory space on the 5th floor of the cancer center, contains two ABI 373 automated sequencers. The immunogenetics core research laboratory, also on the 5thfloor of the cancer center, provides approximately 800 sq ft of additional laboratory space for molecular genetics work.

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CORE SERVICES

The Molecular Genetics Laboratory will utilize current SNP technologies to:

1) identify and characterize DNA sequence variation in the NHGC African American population resource,

2) generate databases for locating functional mutations in candidate genes involved in the biology and pathophysiology of complex diseases common in African Americans and other populations in the African Diaspora,

3) develop a database of allele and haplotype frequencies for a reference panel of SNP variants in the NHGC population resource. This will include a set of candidate genes for complex diseases common in African Americans,

Prostate Cancer

Breast cancer

Asthma

Type 2 diabetes

Hypertension

HIV aids

4) Use coalescence models to construct phylogenies of the candidate genes in order to evaluate the evolutionary history of the genes in various populations. Construct haplotype phylogenies for a reference set of DNA loci/markers representative of various types of polymorphic systems found in the genome. This will include but is not limited to the following:

Single nucleotide polymorphisms (SNPs)

Microsatellites (mono, di, tri, and tetra nucleotide repeats)

Minisatellites (variable number of tandem repeats/VNTRs)

Nucleotide insertions and deletions

Alu repeats

MOLECULAR GENETICS UNIT GROUP PICTURE

06-Jan-2008

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See the article here:
Howard University National Human Genome Center

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Stem Cell Therapy | Dr Jeff Bradstreet, MD, MD(H), FAAFP

October 18th, 2015 7:40 pm

On this blog I have been writing about stem cells, hyperbaric oxygen (HBOT), and some incredible new observations related to reversing brain inflammation. All of the diseases I listed above and a whole bunch more are tied to persistent inflammation. Inflammation itself is very important to the body. In a healthy person it doesnt persist. It comes in response injury or infection cleans that up then stem cells communicate the need to stop the inflammation and heal. To that extent, these chronic persistent inflammatory conditions are the result of a failure of stem cells to do their job to counter inflammation. I will explain what is keeping them out of the process below and in future posts.

As this following picture demonstrates, the balance of inflammation regulation in the brain is complicated, intricate and precarious. But science has reached a point where we understand a large portion of the regulatory pathways.

[Frontiers in Bioscience 14, 5291-5338, June 1, 2009]

Caption: Microglia are the primary recipients of peripheral inflammatory signals as they reach the brain. Activated microglia initiate an inflammatory cascade by releasing cytokines, chemokines, prostaglandins and reactive nitrogen and oxygen species (RNS and ROS, respectively). Bi-directional exchanges between microglia and astroglia amplify inflammatory signals within the central nervous system (CNS). Cytokines including interleukin (IL)-1, IL-6, tumor necrosis (TNF)-alpha and interferon (IFN)-gamma induce indoleamine 2,3 dioxygenase (IDO), the enzyme responsible for degrading tryptophan, the primary precursor of serotonin (5-HT), into kynurenine, which is eventually metabolized into quinolinic acid (QUIN), a potent NMDA agonist and stimulator of glutamate (Glu) release. Multiple astrocytic functions are compromised due to the excessive exposure to cytokines, prostaglandins, QUIN and RNS/ROS, ultimately leading to downregulation of glutamate transporters, impaired glutamate reuptake, excessive glutamate release and compromised synthesis and release of neurotrophic factors. Oligodendroglia suffer damage due to toxic overexposure to cytokines such as TNF-alpha, and diminished neurotrophic support, both of which promote apoptosis and demyelination. Copious amounts of glutamate are released from astrocytes in the vicinity of extrasynaptic NMDA receptors, whose activation leads to inhibition of BDNF synthesis. Excessive NMDA activation, caused by QUIN and D-serine, is compounded by diminished glutamate reuptake by astrocytes and oligodendroglia. NMDA-mediated excitotoxicity, combined with a consequent decline in neurotrophic support, and an increase in oxidative stress, synergistically disrupts neural plasticity and induces apoptosis (cell death).

So it doesnt matter if we are talking about autism, post-stroke inflammation, Alzheimers, HIV dementia; the central mechanism is largely the same.

Now this is important to understand: if we have persistent inflammation in the brain, what is driving that signal? The immune system has lots of regulatory steps designed to keep it in balance, but despite all the intrinsic safeguards in the system it has lost control. Why?

Some perspective: About 5 years ago I was sitting on a bus with Professor Thayne Sweeten. We were on our way to dinner to relax after a full day of brainstorming as a group of researchers interested in autism. Thayne is a bright guy. His PhD dissertation was Immune Activation and Autoimmunity in Autism. He explained from everything he had seen regarding the immune system of autism; the CSF observations, the increase in neopterin, etc,, that at least a significant subgroup of children had the immunological footprint of a persistent viral pathogen.

I agreed and I still do agree especially after 5 years of discoveries. And it doesnt have to be a virus: many other pathogenic bacteria and fungi could cause the same response. But for simplicity lets just say virus.

We dont have to agree about which virus is persistent in autism, it actually doesnt matter that much. I am surprised to hear myself say that, but after what I have learned in the last few months, I dont think the actual virus is that important. That is because most do not have a specific anti-viral drug (apart from HIV and some Herpes viruses). Even in those cases the drugs are inadequate and something else is needed.

THE IMMUNE SYSTEM IS BLINDED

The picture depicts the blind miraculously being given sight. I would love to see a miracle of immune unblinding in autism, or any of these other disorders. Absent that we need to give it sight medically.

If you read my blog about this last night I spoke about the problem. We have a raging immune response just like we would expect with a viral infection, except it doesnt go away. Why? The immune cells (particularly macrophages) seem to be blind and cannot find the enemy they are looking for. So while they stumble around, unable to find the viral enemies, the entire system stays turned on. And it will stay turned on until either stem cells say enough its time to heal, or until the virus is eliminated.

The evidence is we dont generate enough stem cell response to regulate this type of immune response presumably because the viruses are still present. Therefore, extra stem cells may help cool the immune fires. BUT, and it is an important but, do we want to down-regulate the immune system if a virus is still present? My belief is no.

What we want is to make the virus go away and with that have the immune response naturally calm down.

To do that we have to give sight to the blind and help the macrophages find their targets.

To do this we are working with some of the finest biotech labs in Europe and we believe we have the solution. More on that to come.

A brief but helpful discussion about TNF alpha is on wikipedia. http://en.wikipedia.org/wiki/Tumor_necrosis_factor-alpha

Continue reading here:
Stem Cell Therapy | Dr Jeff Bradstreet, MD, MD(H), FAAFP

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Sports Medicine Detroit | DMC Sports Medicine Program …

October 17th, 2015 7:42 pm

Where does it hurt? Detroit Medical Center is proud to be the official Healthcare Services Provider of the Detroit Tigers, Detroit Red Wings, Detroit Pistons, Detroit Grand Prix and the Detroit Free Press Marathon.

DMC Sports Medicine is dedicated to bringing the local Collegiate, School-Aged, Club Sport athletes and Weekend Warriors the same expert care as we provide the professional athletes on the Detroit Tigers, Detroit Pistons, Detroit Red Wings and Detroit Grand Prix. For years, the Detroit Medical Center has provided top level care to our pros and with DMC Sports Medicine you too are a VIP!

Talk to a DMC Sports Medicine physician about your injury 24/7 If you or a member of your family has a sports injury and you are not sure what to do, for immediate attention or to schedule an appointment, call 313-910-9328 to get in touch with DMC Sports Medicine physician 24/7 regarding your injury.

DMC Therapists and Trainers The DMCs Sports Medicine Program can help you get back in the game, thanks to the DMC Rehabilitation Institute of Michigans expert therapists. The DMC Sports Medicine program offers 30 convenient locations across southeast Michigan for patients seeking the best in physical medicine and rehabilitation. Click here to find a location near you.

DMC Sports Performance Academy The DMC Sports Performance Academy is designed to give athletes instruction and training in Performance Enhancement in their specific sport. Our Sports Medicine Physicians, Physical Therapists and Certified Athletic Trainers are dedicate to working with athletes to return from injury, prevent future injuries or lead them in reaching their athletic potential and improving their performance in their sport.

To learn more aboutthe Sports Performance Academy, click here.

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Sports Medicine Detroit | DMC Sports Medicine Program ...

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Preventive Medicine | Student Health Center | SIU

October 17th, 2015 10:43 am

Preventive medicine services focus primarily on preventive health care including required and recommended vaccines, allergy shots, TB screening, prescription injection medications, and traveler's health.

The Preventive Medicine Program will administer injections when requested by a Student Health Services provider or an outside provider. The following criteria must be met in order to proceed with the injection.

Tuberculosis, also called TB, is an infection caused by a bacteria that commonly affects the lungs but can spread to other parts of the body. It is particularly common in some international countries. At SIU Carbondale, all incoming international students are required to have a TB screening. There are two different screening tests for TB infection which include PPD skin test and the Quantiferon Gold test, which is a blood sample. Your provider will decide which test is most appropriate for you.

We also provide this service to students who are required to have testing for certain school or employment reasons such as hospital or medical personnel, students in medically based programs, teachers/student teachers, etc.

Tuberculosis testing is performed in our Preventive Medicine Office and is by appointment only. PPD Skin testing is not performed on Thursdays as the test must be read in 48-72 hours which falls on the weekend when we are closed. If the test is not read in 48-72 hours it will need to be repeated.

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The goal of the Allergy Injection Program is to maintain a desensitization program for students who have been started on allergy injections by their private allergist. We do require that at least the initial injection be administered at the allergists office. Injections are by appointment only. Students requesting to continue on an established injection program must have their private allergist provide the following:

This information may be sent to:

Student Health Services Attention: Preventive Medicine Southern Illinois University Carbondale 374 E. Grand Avenue Carbondale, IL 62901

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Excerpt from:
Preventive Medicine | Student Health Center | SIU

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Chicago Illinois Office of the American Diabetes Association

October 17th, 2015 10:41 am

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Illinoisans are increasingly feeling the effects of diabetes as thousands of people suffer from the disease, and many others may have diabetes and not know it! It is estimated that one out of every three children born after 2000 in the United States will be directly affected by diabetes.

That is why the American Diabetes Association's Chicago office is so committed to educating the public about how to stop diabetes and support those living with the disease.

We are here to help.

Additional Events

We welcome your help.

Your involvement as an American Diabetes Association volunteer whether on a local or national level will help us expand our community outreach and impact, inspire healthy living, intensify our advocacy efforts, raise critical dollars to fund our mission, and uphold our reputation as the moving force and trusted leader in the diabetes community.

Find volunteer opportunities in our area through the Volunteer Center.

Read more:
Chicago Illinois Office of the American Diabetes Association

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