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Bioinformatics analyses of potential ACLF biological mechanisms and identification of immune-related hub genes and vital miRNAs | Scientific Reports -…

August 19th, 2022 2:08 am

ACLF is a systemic inflammatory disease accompanied by immune dysfunction and disturbances in energy metabolism. ACLF has a high short-term mortality, which increases with the incidence of failing organs. Although many studies regarding ACLF have been performed, its underlying mechanisms remain to be fully explored. Meanwhile, it has been demonstrated that a strong immune response is a key mechanism of ACLF18,19. Therefore, we explored the intrinsic mechanisms of immune cell infiltration in ACLF using an effective informational biology approach.

Herein, we identified macrophage-associated co-expressed gene modules in ACLF for the first time using a combination of WGCNA and CIBERSORT. We identified immune-related key genes and provided new pathways for future studies on effective targets for ACLF treatments. After bioinformatics and qRT-PCR experiments, 10 immune-related hub genes were identified and mir-16-5p and mir-26a-5p were validated. Altogether, these results might provide new strategies for understanding the pathogenesis of ACLF and developing targeted therapeutic molecules.

In the present study, we evaluated potential pathways and biological processes of ACLF using enrichment analyses. GSEA is characterized by the analysis of collections of genes rather than individual genes, which helps to avoid the inability to reproduce individual high-scoring genes due to poor annotation. In the GSE142255 dataset, the GSEA indicated that immune response, inflammatory pathways, and metabolic pathways were mainly involved in ACLF. Then, we found that the downregulated DEGs were mainly engaged in immune response and inflammatory reaction, while upregulated ones regulated biosynthetic and substance metabolism pathways. These results reflected two major biological processes that co-occurred during the progression of ACLF regulated by different genes: imbalance of immune-inflammatory response and energy metabolism. According to the BP analysis, immune cell activation, differentiation, proliferation, and migration were the major biological processes in ACLF, leading to an expanding inflammatory response. Recently, it was reported that excessive activation of the immune response not only causes a systemic inflammatory response, which subsequently mediates immune-related tissue damage, but also leads to high energy demand. Consequently, the immune system competes with peripheral organs for energy, triggering an immune-related energy crisis in the organism and increasing the risk of organ failure18,20,21. Overall, it was suggested that the hyperimmune response and dysfunctional energy metabolism in ACLF are biologically coupled processes, largely influencing ACLF progress.

CIBERSORT is a widely used deconvolution machine algorithm for estimating the composition of immune cells. It shows superior performance in the identification and fine delineation of immune cells when processing highly noisy mixture data8,22. Here, the CIBERSORT results showed that the population of M0 and M1 macrophages was significantly increased in ACLF patients compared to healthy subjects. We also labeled markers on the surface of macrophages by immunofluorescence and validated their increase in M1 macrophages in the liver of ACLF rats. Macrophages can be polarized into M1 or M2 phenotypes. M1 macrophages can release significant influxes of inflammatory factors and induce cytokine storms with pro-inflammatory effects. On the other hand, M2 macrophages secrete tissue repair factors and exhibit anti-inflammatory and reparative properties23,24. Kupffer cells, a type of macrophage that resides in the hepatic sinusoids, mainly perform innate immune and inflammatory responses25. To search for highly related gene modules, WGCNA identifies similar gene clusters and gene modules by hierarchical clustering. WGCNA also supports the analysis of correlations between gene modules and phenotypic traits26,27. To identify gene clusters associated with macrophages, we performed WGCNA and identified gene modules closely related to M1 macrophage polarization, including the coral1 (containing 3631 genes) and darkseagreen4 (containing 307 genes) modules. Based on the WGCNAs gene modules, we screened immune-related DEGs and constructed a PPI network to find ACLF immune-related hub genes.

Ten hub genes were screened using CytoHubba: RSL1D1, RPS5, CCL5, HSPA8, PRKCQ, MMP9, ITGAM, LCK, IL7R, and HP (Table 3). The differential expression of hub genes was further confirmed by qRT-PCR in ACLF rats. Overall, MMP9, ITGAM, and IL7R were highly expressed during ACLF. Furthermore, ACLF has high 28-day mortality that is closely related to the degree of organ failure in patients. Hence, we used the GSE168048 microarray containing gene expression data of ACLF patients who survived or died at 28days for further investigation. We verified that the expression of RPS5, PRKCQ, MMP9, LCK, ITGAM, IL7R, and CCL5 differed between surviving and deceased patients, suggesting that these genes might be closely related to ACLF progression and could be used to predict ACLF survival status at 28days. Notably, downregulated genes were mostly involved in the promotion of immune response, while the upregulated gene, MMP9, was associated with hepatocyte necrosis. These results suggested that the coexistence of immune paralysis and cell necrosis is a potential ACLF mechanism leading to poor prognosis.

Moreover, miRNAs are potential targets in numerous diseases and control various biological processes. As short-chain RNAs with a coding length of only about 22 nucleotides, miRNAs cannot directly be translated into proteins, but rather regulate protein synthesis by disrupting the stability of target mRNAs and inhibiting their translation through complementary pairing28. Studies have explored the relationship between miRNAs and diseases and proposed the use of miRNAs as a biomarker for disease diagnosis and prognosis as well as a small molecule drug target29. Considering the time and cost of experimental studies, we adopted a database approach combined with experimental validation to study miRNAs that were significantly altered in ACLF. The miRNet 2.0 integrates data from 15 prediction databases and provides visual analytics to enable a more comprehensive and convenient evaluation of the interactions between miRNAs, mRNAs, lncRNAs, and transcription factors15. Herein, we used miRNet 2.0 to construct a miRNA-hub genes network to explore potential miRNAs related to ACLF. During the validation, two miRNAs were significantly altered in ACLF rats: mir-16-5p presented increased expression and mir-26a-5p showed decreased expression. M1 macrophages can transfer mir-16-5p to gastric cancer (GC) cells by secreting exosomes and triggering a T-cell immune response to suppress tumor formation by decreasing the expression of PD-L130. It has been demonstrated that mir-26a-5p decreases with ACLF progression and is associated with worsening liver function and increasing liver disease severity31. However, further studies are needed to validate the potential association between miRNA regulatory networks and ACLF.

Predicting potential disease-associated miRNAs is very meaningful and challenging. Thus, researchers have developed several computational methods and models to perform those predictions. These models can be classified into four categories: score functions, complex network algorithms, machine learning, and multiple biological information29. For example, Chen et al.32 proposed an inductive matrix filling model (IMCMDA) for miRNA-disease association prediction. By integrating miRNA and disease similarity information into the matrix-populated objective function, a low-dimensional representation matrix of miRNAs and diseases was obtained, which was finally combined into a miRNA-disease association score matrix. Chen et al.33 improved the HGIMDA model and further provided the MDHGI model. This model first decomposes the miRNA-disease association matrix to remove data noise, then uses the topological information implied to make predictions through heterogeneous graph inference. It combines machine learning with network analysis methods to make effective predictions for new disease-miRNA associations. Further, Chen et al. proposed an Ensemble of Decision Tree-based MiRNA-Disease Association prediction (EDTMDA) model34 based on the construction of multiple decision trees by randomly selecting negative samples, miRNA features, and disease features, and by dimensionality reduction of the features. The mean of the predicted values from these decision trees is used as the miRNA-disease association score. This model incorporates feature dimensionality reduction into integrated learning to remove noise and redundant information in the learning process and reduce the computational complexity of the model with higher prediction accuracy. Moreover, Liu et al.35 proposed a DFELMDA-based deep forest integrated learning approach to infer miRNA-disease correlations. This model trains a random forest by constructing two auto-encoders based on miRNAs and diseases, extracting low-dimensional feature representation, and finally predicting potential miRNA-disease associations through the random forest. This model combines feature and deep forest-integrated learning models to enhance the prediction accuracy. Bioinformatics-based prediction methods are constantly evolving. Nevertheless, different models have almost different predictive performance for the same datasets. Hence, it is not only necessary to collect large-scale experimental data but also consider other algorithms to improve predictive performance for specific diseases.

Besides the methods covered in this study, the multi-field predictive research of bioinformatics offers a unique perspective on the exploration of diagnostic and therapeutic tools for diseases, not only for ACLF. Currently, with the development of genome-wide technologies, there is an increasing need to explore models that detail the exact mechanisms in which genes and proteins interact to form complex living systems. A gene regulatory network (GRN) is a network of interactions between gene molecules. An improved Markov blanket discovery algorithm based on IMBDANET has been proposed and can effectively distinguish between direct and indirect regulatory genes from GN and reduce the false-positive rate in the network inference process36. Additionally, RWRNET is an algorithm of Random Walk with Restart (RWR) modified by restart probability, initial probability vector, and roaming network applied to GRN that continuously maps the global topology of the network and estimates the affinity between nodes in the network through circular iterations until all nodes are traversed37. In contrast, IMBDANET uses a Markov blanket discovery algorithm for network topology analysis and processing, identifying direct and indirect regulatory genes while solving the problem of isolated nodes. On the other hand, RWRNET focuses on global network topology information but it cannot handle isolated nodes. Finally, the integration of different methods can be more beneficial for the prediction of gene regulatory relationships.

Here, we combined WGCNA and CIBERSORT algorithms and employed GSEA, KEGG, and GO enrichment analyses to explore immune-related hub genes and potential biological mechanisms in ACLF. The hub genes and miRNAs involved in ACLF regulation were also further validated. Since there are few studies regarding ACLF mechanisms, adopting bioinformatics analyses provided valid information and guidance for our research. However, our current study also has some limitations. First, we used an animal model rather than samples from humans to validate the ACLF immune-related hub genes, and the results from animal studies should be treated with caution. Furthermore, although these hub genes and miRNAs were altered and might be involved in the development of ACLF, whether these genes can be new therapeutic targets for ACLF still needs to be explored. Therefore, further experiments are required to validate our findings and explore potential ACLF mechanisms.

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Bioinformatics analyses of potential ACLF biological mechanisms and identification of immune-related hub genes and vital miRNAs | Scientific Reports -...

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Nasal vaccines could snuff out COVID, but the hurdles are not to be sneezed at – Sydney Morning Herald

August 19th, 2022 2:08 am

The largest army of immune cells in the body work together to filter out all the pathogens we inhale every day, defeating viruses and other invaders without us ever knowing.

But viruses have evolved tricks of their own, allowing them to infect the cells and use its molecular machinery to copy itself over and over before spreading down into the lungs and the rest of the body.

Current generation COVID-19 vaccines offer fantastic protection against serious illness and death by recruiting antibodies in the blood that can block the virus spreading to the organs. But these vaccines struggle to generate antibodies in the nose.

The big issue is infection. The current gen of vaccines dont stop infection, said Associate Professor Nathan Bartlett, head of viral immunology at Hunter Medical Research Institute and the University of Newcastle. The virus can continue to circulate, attacking the vulnerable and finding new ways to mutate around our defences.

At least eight nasal vaccines for COVID-19 are in development, according to the World Health Organisation.

They include a phase 1 trial of Tetherexs nasal COVID-19 vaccine SC-Ad6-1 led by the University of Queenslands Associate Professor Paul Griffin. The spray contains a harmless virus modified to look like SARS-CoV-2. The virus infects nose cells and replicates theoretically prompting the immune system into a strong response.

People wear face masks in Melbourne in July.Credit:Getty

Bartlett is working with ENA Respiratory to develop INNA-051, a nose spray full of molecules that bind to cell receptors that trigger the bodys powerful innate immune system, which is capable of fighting off viruses without needing antibodies or T cells. It gives the immune system a head start, Bartlett said.

However, that head start lasts only a week. Bartlett expects the spray would need to be used every week to maintain protection.

In animal trials, the treatment dramatically reduced COVID-19s ability to replicate in the nose. The treatment Bartlett is careful not to call it a vaccine is now in phase 2 clinical trials in humans.

Nasal vaccines face a key challenge: getting a strong and long-lasting immune response in the nose.

The nose is constantly exposed to viruses, bacteria and pollution, so every time we breathe in, immune cells there are much less aggressive than in other parts of the body.

All the stuff were breathing in, if we responded aggressively, wed have a lot more allergies, Griffin said. And antibodies generated in the nose are typically short-lived.

Another problem is getting the dose right. This is easy with a syringe into a vein, but very difficult when spraying fluid into the nose. What if the users nose is blocked? What if they sneeze? The vaccines also need to be carefully designed to not cause an allergic reaction.

And then there is the mucus itself. Vaccines need to penetrate it to get an immune response and then must stay around long enough to really fire up the system a tough task when mucus is constantly being cleaned out of the nose.

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Griffin said he was confident well get at least one intranasal protection soon. Bartlett is less so. He points out that regulators are unlikely to offer quick emergency approval to new vaccines now and any vaccine that gets approved would likely be out of date immediately, as the virus continues to mutate.

Whether it will have a huge impact on this pandemic, Im not sure, he said. But its critical for protecting us against the next one.

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Paxlovid Rebound: RWE Analysis and Alternative Therapies in Development – BioSpace

August 19th, 2022 2:08 am

Fabian Sommer/Picture Alliance via Getty

Paxlovid is one of a handful of drugs authorized to treat COVID-19 in the United States. As recently experienced by President Biden, its use is not without challenges and sometimes leads to relapse. The President, like many others, tested negative for COVID-19 after five days of Paxlovid treatment, then tested positive again a few days later.

Although such treatment rebound rates are assumed to be low, there is little data to support or dispute that assumption. Researchers at Case Western University looked at the real-world experiences of 13,644 patients who were treated with Paxlovid or Lagevrio (molnupiravir) during the first half of 2022. The study was intended to determine the prevalence of three types of rebound outcomes with these two therapies, each of which has emergency use authorizations as treatments for COVID-19.

Comparing Paxlovid and Lagevrio

In that study (currently in preprinton medRxiv, co-author Pamela Davis, M.D. and colleagues found that the 7-day and 30-day rebound rates associated with Paxlovid treatments, respectively, were 3.53% and 5.4% for COVID-19 reinfection; 2.31% and 5.87% for COVID-19 symptoms; and 0.44% and 0.77% for hospitalizations.

The rebound rates for patients treated with Lagevrio were somewhat higher. The 7-day and 30-day rebound rates for this therapy were 5.86% and 8.59% for COVID-19 infection; 3.75% and 8.21% for COVID-19 symptoms; and 0.84% and 1.39% for hospitalizations. Propensity-score matching rendered these differences negligible, however.

Patients who rebounded from either therapy had a significantly higher prevalence of underlying medical conditions than those without, the authors noted in the paper. However, There is no underlying condition that stands out, Davis told BioSpace. We had thought (the rebound group would be composed of) immunocompromised people, but heart disease, hypertension, mood disorders and so on, all are increased in the rebound group.

The implications upon dosage or duration of treatment have not been determined, she said, but changes should be considered. If I had a patient with risk factors, for whom the disease might be more than a nuisance, I might be tempted to treat for a longer period of time.Also, I would try to start the drug earlier in the course of the disease, when the virus has had less time to replicate, but I have no data to show that would work, she acknowledged.

Davis and her colleagues called for continued surveillance of patients after treatment with either Paxlovid or Lagevrio, and for additional studies to determine the mechanism of action of the rebound as well as the most effective dosing and duration regimen.

Paxlovid is the combination of two drugs: nirmatrelvir, which blocks viral replication, and ritonavir, which slows the degradation of nirmatrelvir. Ian Chan, co-founder and CEO of Abpro, told BioSpace the therapy is like a carpet-bombing approach. It can kill COVID, and healthy cells as well. Because its a small molecule it also can have multiple drug-to-drug interactions, so its high efficacy comes with high toxicity, he noted. There also a risk for COVID to mutate around it, developing resistance as the virus changes.

No one yet knows why Paxlovid rebound occurs but, Our theory is that because this drug is prescribed very early on, there is less chance for the immune system to develop a response (to the virus), Chan said.

One solution to therapeutic rebound, he said, is to develop more types of therapies. COVID-19, unfortunately, is going to be around for a while. We need a battery of different treatments just to be ready for the different possible scenarios.

Abpro is developing monoclonal antibody (mAb) therapies for COVID-19, as well as for immuno-oncology and ophthalmology. The benefit, Chan explained, is that the safety of mAbs has been proven. These are natural molecules your immune system already is producing on a day-to-day basis. Their toxicity generally is very low and efficacy is very high, and they are very targeted therapies, he said. So far, there have been no therapeutic relapses.

Potential Therapies for the Immunocompromised

To treat COVID-19, Abpro is focusing on treatments for the approximately 15 million immunocompromised individuals in the U.S. who, because of their weakened immune systems, dont respond to vaccines.

The companys lead compound, ABP-300, is in Phase II clinical trials. It basically prevents the virus from binding in the body, thus neutralizing it. Other antibodies are undergoing investigational new drug application (IND)-enabling studies.

One of those, ABP-C19-01, is a cocktail of antibodies that lowers patients risk of contracting COVID-19 if they are exposed to the SARS-CoV-2 virus. This therapy isnt a vaccine, Chan stressed. Vaccines are meant to stimulate an immune response, which generates an antibody. This delivers the antibody directly. It is complementary to vaccines.

Another company, 3CL Pharma, a subsidiary of Todos Medical, is developing possible mitigations for Paxlovid rebound that work by supporting the immune system and inhibiting 3CL protease activity. Its solutions include Tollovir and Tollovid.

A Phase II trial of Tollovir, which is being developed to treat hospitalized COVID-19 patients, was completed in May in Israel.

Were developing Tollovir as an alternative for Paxlovid, Gerald Commissiong, CEO of Todos Medical, told BioSpace. It is similar to the nirmatrelvir portion of Paxlovid, but is a botanical, so it works slower. Also, rather than affecting the virus directly, Tollovir works on the 3CL protease, which is responsible for helping a virus that already has replicated to infect other cells.

The other compound, Tollovid, is being developed as an over-the-counter dietary supplement. According to Todos literature, it has very strong 3CL inhibition. It may be taken as a 5-day regimen, or in a daily formulation for immune system support. It may become a rescue agent for Paxlovid rebound.

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Predicting response to immunotherapy in gastric cancer via multi-dimensional analyses of the tumour immune microenvironment – Nature.com

August 19th, 2022 2:08 am

Clinico-pathological features of the GC patients

Eighty patients were enrolled in this study between July 2014 and December 2019 (Table1). The median age of the patients was 60 years (range, 5466 years), and most patients were men (76.3%). Among the 60 patients subjected to immunotherapy, 21 were treated with standard-of-care anti-PD-1/PD-L1 antibodies and 39 were treated as part of clinical trials (NCT03472365, NCT03713905). Archived pre-treatment samples were available from all patients. Ten (12.5%) patients were EBV(+) and 11 (13.75%) had confirmed deficient DNA mismatch repair (dMMR) GC.

To investigate the landscape of TIICs within the GC specimens, we quantified the density and spatial location of immune cells in 80 full-face formalin-fixed paraffin-embedded (FFPE) samples via m-IHC staining; the multiplex determination of the sub-cellular expression of 16 proteins was performed (Fig.1a). First, haematoxylin and eosin (H&E)-stained tissue sections were reviewed by two pathologists (S.Y. and H.Y.J.) to identify tumour core (TC), invasion margin (IM), and peri-tumoural normal (N) areas, which we refer to as regions of interest (ROIs) (Fig.1b). The m-IHC panels analysed are depicted in Fig.1cf. A total of 6488 high-power fields (TC: 4477, IM: 993, N: 1018) were imaged for all patients. A supervised image analysis system (inForm) was used to classify each image into tumour nests and stromal areas based on machine learning (Fig.1g). Cell segmentation showed nuclear, cytoplasmic and membranous outlines. Cell phenotyping data were obtained based on the positivity and relative intensity of all markers in one panel. The cell density, calculated for all regions (tumour + stroma), was measured separately in the tumour and stroma. Thereafter, TIICs were analysed at the single-cell level and 26 major populations were characterised (Supplementary Fig.1a).

a Schematic representation of the experimental design and analytical methods used in this study. b Selection of the regions of interest (ROIs) in representative images of haematoxylin and eosin (H&E)-stained formalin-fixed paraffin-embedded tissues. TC, tumour core; IM, invasion margin; N, normal tissue. Scale bar: 3mm. cf Representative composite and single-stained images of the multiplex immunohistochemistry panels used. Scale bar: 200m. g Overview of the automated image analysis pipeline.

To examine the distribution of TIICs within the tumour microenvironment, we analysed their spatial density in the TC, IM, and N areas. The enriched co-occurrence of immune populations defines a structured immune environment (Supplementary Fig.1a). A significant increase in the overall density of CD68+ cells was observed within the TC compared with that in the adjacent normal tissues; an opposite trend was observed for CD8+ and CD20+ cells (Fig.2a). Next, for a higher degree of detail, the distribution of each TIIC was explored. CD8+, CD8+PD-1LAG-3, CD20+ and CD68+CD163+HLA-DR cells accumulated at the IM and decreased toward the TC. In contrast, CD8+PD-1+TIM-3+, CD8+PD-1TIM3+, CD8+PD-1+LAG-3+TIM-3+, CD8+PD-1+LAG-3TIM-3+, CD4+FoxP3+CTLA-4+, CD4+FoxP3CTLA-4+, CD68+, CD68+HLA-DR+CD163 cells accumulated at the TC and decreased toward the IM. Interestingly, a higher density of CD4+FoxP3+ and CD4+FoxP3+PD-L1+ cells was found within the TC than in normal tissues (Fig.2b, Supplementary Fig.1b), highlighting the heterogeneous distribution of TIICs in GC.

a Constitution of the main tumour-infiltrating immune cell (TIIC) populations. KruskalWallis test with the Dunns multiple comparison test. b Density of TIICs across the regions of interest (n=80). TC, tumour core; IM, invasion margin; N, normal tissue. Immunofluorescence staining images refer to the co-expression of the corresponding markers and DAPI (nuclei). Scale bar: 20m. Box and whiskers represent mean1090 percentile. KruskalWallis test with Dunns multiple comparison test. c TIIC density grouped by subtypes. d Overall survival of 80 patients based on the density of TIICs. The individual TIICs were divided into high (>two-thirds of the patients; blue line) or low density (two-thirds of patients; red line). Log-rank (MantelCox) test was used. A two-sided P<0.05 was considered statistically significant.

Additionally, the localisation of TIICs with respect to the tumour nest and stroma areas (defined in Fig.1g) was further examined. CD8+, CD4+ and CD20+ cells were located primarily in the stroma and were less prevalent in the tumour nest. In contrast, CD66b+ cells were more prevalent in the tumour nest than in the stroma (Supplementary Fig.2a).

To evaluate the tumour immune microenvironment in GC, we compared the density of TIICs in the context of distinct clinico-pathological factors (Fig.2c, Supplementary Fig.3ae). Generally, there were few significant differences between Lauren classification, tumour differentiation and tumour location (oesophagogastric junction or not) with respect to densities of TIICs (Supplementary Tables15, Supplementary Fig.4a). Additionally, there were few differences in the density of TIICs between HER2-positive and -negative GC (Fig.2c). Overall, the density of total CD8+, CD4+ and CD68+ cells was associated with the disease stage. Additionally, advanced-stage GC (III-IV) samples showed a higher density of exhausted CD8+ T cells, CD4+FoxP3 cells and so on.

Furthermore, we analysed the density of TIICs in GC of different molecular subtypes (Supplementary Tables68). Interestingly, EBV-positive tumours showed higher densities of CD8+PD-1LAG-3 T cells than EBV-negative ones. EBV (+) GCs were characterised by abundant immune cell infiltration; however, not all EBV (+) patients responded to immunotherapy, indicating that specific immune cell infiltration is needed. Proficient MMR (pMMR) tumours showed a significantly higher abundance of total CD4+, CD68+, CD20+ and CD66b+ cells than dMMR tumours. Higher CD68+ and CD66b+ cells (neutrophils) are known to contribute to resistance to PD-1/PD-L1 treatment in several cancers13,19. We classified patients into four combined positive score (CPS) groups: CPS<1, 1 CPS<5, 5 CPS<10 and CPS10. Remarkably, the abundance of TIICs, including CD8+, CD4+, CD68+, CD20+ and CD66b+ cells, significantly increased with the increase in CPS, indicating a hotter tumour immune environment. However, the comparison between CPS 5-10 and CPS10 did not show a significant difference, providing evidence for the cut-off selection in clinical trials of anti-PD-1/PD-L1-based therapies. Altogether, as shown in Fig.2c, our results suggest that the infiltration pattern of immune cells depends on, but is not restricted to, GC molecular subtypes.

Next, we sought to understand whether the number of TIICs is correlated with patient survival. We found that higher levels of tumour-infiltrating T cell subsets, including CD8+PD-1+LAG-3+TIM-3+, CD4+FoxP3+CTLA-4+ T and CD68+STING+ cells, were associated with inferior overall survival (OS) in 80 patients (Fig.2d, Supplementary Fig.4b). CD8+PD-1+LAG-3+TIM-3+ cells [high vs. low, hazard ratio (HR) 1.98, 95% confidence interval (CI; 1.123.50)] and CD68+STING+ cells [high vs. low, HR 1.83, 95%CI (1.013.33)] were significantly associated with OS, as revealed by multivariate Cox analysis (Supplementary Table9). Collectively, these data highlight the clinical relevance of tumour-infiltrating T cells in the survival of GC patients.

Additionally, we analysed the prognostic value of the density of TIICs in the context of tumour and stromal cells. The data showed a similar trend for CD4+FoxP3CTLA-4+ T and CD4+FoxP3+CTLA-4+ T cells in both contexts. However, higher infiltration of CD8+PD-1+LAG-3+TIM-3+ T cells and CD68+ macrophages was associated with poorer OS with respect to tumour nests. In addition, higher infiltration of CD8+PD-1+TIM-3+ T cells, CD66b+ neutrophils and CD68+STING+ macrophages was related to a shorter OS with respect to the stroma (Supplementary Fig.2b). Therefore, these results highlight the value of studying immune cell density in defined tissue regions.

Given our ability to precisely define the positions of individual tumour cells and TIICs, we next sought to evaluate the clinical significance of the proximity between them. The observation that certain TIICs, including CD68+ cells, were enriched in the tumour region suggested that the proximity of TIICs to tumour cells might influence their phenotype. To further study these localisation patterns, a bioinformatics tool (pdist; see Methods) that determines the nucleus-to-nucleus distances between any two cell types was used. To incorporate both cell proximity and quantity, an effective score parameter was established: the proportion of TIICs near tumour cells (within the defined distance criteria introduced; Fig.3a). In other words, this score was calculated by the number of paired immune cells and tumour cells divided by the total number of immune cells across the whole slides to maintain the spatial variation to a large extent. Therefore, using this formula, a higher effective score indicates that within a certain distance, there is a higher density of tumour cells around the immune cells. Importantly, across the three distances considered (010/020/030m), CD8+PD-1+LAG-3+ T cells and CD66b+ neutrophils were the ones with higher effective scores (Fig.3b).

a Illustration of the distance analysis involving immune and tumour cells. Red dots: tumour cells; green dots: immune cells. The white translucent circle represents the radius. Effective score=number of paired immune cells and tumour cells/number of immune cells. Scale bar: 100m. b The distribution of the effective score of tumour-infiltrating immune cell (TIIC) populations in the tumour core in 10-, 20- and 30m increments (n=80). Error bars represent meanSEM. c Effective score of TIICs in patients grouped by gastric cancer subtypes. EBV, EpsteinBarr virus status; MMR, DNA mismatch repair; CPS, combined positive score. d Overall survival of the 80 patients based on the effective densities (010m and 020m) of TIICs. The individual immune infiltrate values were divided into high (> two-thirds of the patients in the cohort; blue line) or low density ( two-thirds of patients in the cohort; red line). Statistical relevance was defined using the log-rank (MantelCox) test. A two-sided P<0.05 was considered statistically significant.

We also calculated the distance between each TIIC and the closest tumour cell. Neutrophils, B cells and macrophages were located closer to tumour cells. We then analysed the distances between TIICs and tumour cells according to the PD-L1 CPS. In general, TIICs were located closer to tumour cells in patients with CPS10 (compared with the picture with respect to all other groups; Supplementary Fig.6a).

Interestingly, the effective scores also differed between different GC molecular subtypes, including those depending on the EBV, PD-L1 CPS, MMR and HER2 status (Supplementary Figs.5ae, 6b; Supplementary Tables1017). For instance, a significantly higher effective score of exhausted T cells (CD8+PD-1+LAG-3+TIM-3, CD8+PD-1TIM-3+), M1 (CD68+CD163+HLA-DR) and M2 (CD68+HLA-DR+CD163) macrophages within a 20m radius was observed in HER2-negative GC compared with that in HER2-positive GC (Fig.3c, Supplementary Fig.5b).

The combination of multiplexed imaging and machine learning implied that the density of TIICs within GC is linked to patient survival. For further detail, the effective density (the absolute number of TIICs near tumour cells within a 20m radius) was used as an additional measurement. This radius was pre-selected to identify immune cell populations most likely capable of effective, direct, cell-to-cell interactions with tumour cells, consistent with prior studies in multiple gastrointestinal tumour types11,20,21. Curiously, we found that patients with higher effective densities (radius of 020m) of CD68+STING+ macrophages, CD68+HLA-DR+CD163 STING+ macrophages and neutrophils showed significantly shorter OS than those with lower effective densities (Fig.3d). Importantly, the prognostic value was still significant after adjustment using the multivariate Cox model (Supplementary Table18). Other immune cell phenotypes were not associated with OS (Supplementary Figs.6c and 7c). These results indicate that the influence of TIICs on patient survival is dependent not only on the number of TIICs but also on their proximity to tumour cells. Overall, our data highlight that both the location and density of TIICs should be taken into consideration for prognosis predictions.

Human tumours contain exhausted T cells expressing multiple immune checkpoints; it has been proposed that these cells mediate resistance to PD-1 blockade. Thus, next, we investigated whether the density of TIICs and respective effective scores were associated with the clinical outcomes of anti-PD-1/PD-L1 immunotherapy. All 60 patients who received immunotherapy were assigned to the training (n=44, generated retrospectively from 15/11/2016 to 17/7/2019) and validation (n=16, generated prospectively from 29/7/2019 to 19/12/2019) cohorts. Importantly, we ensured that the clinical characteristics of the training and validation cohorts were balanced (Table2). We used logistic regression analysis to assess the association between TIICs and the objective response rate (ORR) in the training cohort. Importantly, we found that the density of CD4+FoxP3PD-L1+ T cells and the effective score of CD8+PD-1+LAG-3 T cells were closely associated with a positive response to anti-PD-1/PD-L1 therapy; conversely, CD8+PD-1LAG-3 T cells and CD68+STING+ macrophages were closely associated with a negative response to anti-PD-1/PD-L1 therapy (Supplementary Table19).

The density of CD4+FoxP3PD-L1+ T cells, CD8+PD-1LAG3 T cells and CD68+STING+ macrophages, and the effective score of CD8+PD-1+LAG3 T cells were used to define a TIIC signature (Fig.4a), with the potential to improve the ability of identifying responders to anti-PD-1/PD-L1 immunotherapy. We used four types of machine learning models and calculated the area under the curve (AUC) of the training and validation cohorts, including extra tree classifier (ETC), AdaBoost classifier (ABC), gradient boosting classifier (GBC) and multi-layer perceptron (MLP) models. In the validation cohort, the average AUCs of the four algorithms were 0.80, 0.85, 0.77 and 0.75, respectively (Fig.4b, c, Supplementary Table20). The corresponding 95% CIs were narrow, suggesting that the TIIC signature can indeed be used to predict the response to immunotherapy (Supplementary Table20). Importantly, the four algorithms showed a similar performance before and after adjusting for the hyper-parameters, indicating the strength of the predictive value of the TIIC signature itself (Supplementary Fig.7a). Furthermore, we explored the predictive power of the TIIC score combined with CPS, EBV status and MMR status. The combined TIIC signature had a better AUC in the ETC, GBC and ABC models, but not in the MLP model (Supplementary Table21).

a Definition of the tumour-infiltrating immune cell (TIIC) signature. Red arrows highlight specific immune cells. b Average area under the curve (AUC) of TIIC signature and combined TIIC signature (TIIC+ EpsteinBarr virus status+mismatch repair status+PD-L1 combined positive score) in the four machine learning models in the validation cohort. c Representative receiver operating characteristic (ROC) curves for the performance of the identified TIIC signature and combined TIIC signature in gastric cancer patients subjected to immunotherapy in the validation cohort. ETC extra tree classifier, GBC gradient boosting classifier, ABC AdaBoost classifier, MLP multi-layer perceptron.

We quantified the contribution of each marker in the prediction models through feature importance using the scikit-learn package (Supplementary Tables22, 23). We outputted the feature importance and the average value of each parameter to present its contribution. As shown in Fig.5a, the effective score of CD8+PD-1+LAG-3 cells had higher feature importance than the density of CD68+STING+, CD4+FoxP3PD-L1+, or CD8+PD-1LAG-3 cells in ETC, GBC and ABC machine learning models. As presented in Fig.5b, the effective score of CD8+PD-1+LAG-3 cells had higher feature importance than that of the other three immune cell types, EBV, MMR and PD-L1 CPS. Thus, the dominant predictive marker is the spatial organisation for response to immunotherapy.

a, b The feature importance of each marker in the prediction model. c, d KaplanMeier curves of the (c) immune-related progression-free survival (irPFS) and (d) immune-related overall survival (irOS) of anti-PD-1/PD-L1-treated patients stratified by the tumour-infiltrating immune cell (TIIC) signature in the validation cohort. Log-rank (MantelCox) test was used for analysis.

We also evaluated the predictive values of other candidate biomarkers. AUCs of 0.58 and 0.76 in the training and validation cohorts, respectively, were defined for PD-L1 CPS (Supplementary Fig.7b). We analysed the treatment response based on EBV status, MMR status and HER2 expression in univariate and multivariable logistic regression models (Supplementary Table24). EBV-positive status and dMMR tended to be associated with a better response. The association of HER2 expression with treatment response was not consistent between univariate and multivariable models. Therefore, taken together, our data suggest that the TIIC signature has a greater power for patient stratification (Supplementary Fig.7b).

Next, we investigated the prognostic use of the TIIC signature; the univariate Cox proportional hazard regression model was used to calculate the HR of each indicator. Then, we used the HR of each indicator as the weight to multiply the value of the indicator itself and then calculated the weighted sum of the four indicators. In this analysis, we categorised patients into high- and low-score groups based on the TIIC signature. The difference in the survival probability over time between the groups was calculated using the KaplanMeier method. As expected, we observed a significant difference in both immune-related progression-free survival (irPFS) and immune-related overall survival (irOS) in the validation cohort (Fig.5c, d, Supplementary Table25). Therefore, the TIIC signature might be useful to identify patients that will show active anti-tumour immune responses a priori.

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Artemisinin Combination Therapy Market Insights and Emerging Trends by 2027 – BioSpace

August 19th, 2022 2:07 am

Wilmington, Delaware, United States, Transparency Market Research Inc. The conventional low-priced mainstay drugs for the treatment of malaria, sulphadoxine-pyrimethamine (SP) and chloroquine (CQ), are witnessing a decline in sales, as they are becoming comparatively ineffective. During the last two decades in Asia, the issue has become a major concern. This has resulted in the adoption of artemisinin (derived from the Chinese herb Artemisia annua) in Africa as a standard treatment.

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It helped in setting a milestone for the artemisinin combination therapy market. The herb has been used to treat fevers and malaria for more than 2000 years. The World Health Organization (WHO) has adopted artemisinin-based combination therapy (ACTs) as the first-line treatment for plasmodium falciparum malaria.

As a combination therapy, it has demonstrated superiority to other drugs because of its ability to wipe out parasites and its life cycle stages faster. Its use with cancer transferrin to cure cancer is also adding value to the artemisinin combination therapy market.

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Triple ACTs (TACTs) combine with artemisinin and two other existing partner drugs to work effectively as stop-gap therapy for the treatment of multidrug-resistant malaria. It will be used till the arrival of new antimalarial drugs. TACTs are secure, competent, well-accepted, and economical. This artemisinin combination therapy is likely to gain wider acceptance among the target consumers. The barriers in the deployment should be identified and stakeholders should make efforts to overcome them, which will new growth avenues in artemisinin combination therapy market.

Artemisinin Combination Therapy Market Introduction

Artemisinin is a plant derivative isolated from Artemisia annua, or sweet wormwood, which is known to effectively and swiftly reduce the number of plasmodium parasites in the blood of malaria patients. The WHO recommends artemisinin combination therapies (ACTs) as the first line of treatment for uncomplicated plasmodium falciparum malaria and as the second line of treatment for chloroquine-resistant P. vivax malaria.

This therapy combines an artemisinin derivative along with a partner drug, wherein artemisinin aids in reducing the number of parasites and the partner drug eliminates the remaining parasites. Efficacy of the treatment is determined by the drug combined with artemisinin, such as artesunate-mefloquine, dihydroartemisininpiperaquine, and artemether-lumefantrine.

Falciparum malaria was one of the most common lethal infections which was treated with chloroquine and sulfadoxine-pyrimethamine. However, these drugs are not effective as treatment primarily in the tropical regions owing to the resistance developed against these drugs. According to the Medicines Malaria Venture (MMV), over 445,000 deaths were reported in 2016 due to malaria. The globally rising malaria endemic and the changing climatic conditions would contribute to the trend aiding in the artemisinin combination therapy market growth.

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Artemisinin Combination Therapy Market- Competitive Landscape

The strategies adopted by the market players to enhance their market position include indication extension, focus on geographic expansion, and research & development. The national funding allocations, as announced by the Global Fund for 2018-2020, report that the funding available for the promotion of malaria programs is around US$1 billion.

Novartis AG

Novartis AG, established in 1895, is engaged in research, development, manufacturing and marketing of healthcare products across a range of areas, including neuroscience, ophthalmology, immunology, hepatology, respiratory, cardiology, dermatology, and cardio metabolic.

Sanofi

Sanofi, a leading pharmaceutical company is engaged in the manufacturing of prescription pharmaceuticals and vaccines. It is engaged in the development of cardiovascular, metabolic disorder, central nervous system (CNS), oncology, and thrombosis drugs and medicines.

Ipca Laboratories Ltd.

Ipca Laboratories is an Indian pharmaceutical company engaged in the manufacturing of over 350 formulations and 80 APIs for a range of therapeutic indications. According to the company, it is the market leader in India for anti-malarials with a market share of over 34% in 2018.

Artemisinin Combination Therapy Market - Dynamics

Growing malaria endemic

Malaria is a major health concern in endemic countries such as Sudan, wherein over 75% of the population is at the risk of acquiring the disease. Moreover, the widespread presence of chloroquine-resistant strains of P. falciparum in the malaria endemic countries makes artemisinin combination therapy the preferred choice of treatment. This is projected to fuel the growth of the artemisinin combination therapy market.

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Increase in the procurement of ACT treatment courses

Increase in access to ACTs in the malaria-endemic countries contributes to the rising success in reducing the global malaria burden. According to the WHO, over 2.7 billion ACT treatment courses were procured by global countries between 2010 and 2017. Moreover, over 62% of these procurements were made by the public sector. Strong pipeline for the development of new anti-malarial drugs and launch of newer artemisinin combinations for the treatment of malaria boost to the growth of the global artemisinin combination therapy market.

Challenges related to the availability of raw materials

Challenges pertaining to the availability of intermediate products and raw materials in the production of artemisinin-based combination therapies from agricultural sources are expected to restrain the global artemisinin combination therapy market. Furthermore, volatility in the artemisinin market leading to concerns over supply tightening could create significant risks to patients and market participants.

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Artemisinin Combination Therapy Market Insights and Emerging Trends by 2027 - BioSpace

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NASEM Recommends That EPA Conduct Ecological Risk Assessment of UV Filters Found in Sunscreen, Including Titanium Oxide and Zinc Oxide – JD Supra

August 19th, 2022 2:07 am

The National Academies of Sciences, Engineering, and Medicine (NASEM) released on August 9, 2022, a report entitled Review of Fate, Exposure, and Effects of Sunscreens in Aquatic Environments and Implications for Sunscreen Usage and Human Health. NASEM was tasked by Congress and funded by the U.S. Environmental Protection Agency (EPA) to undertake a consensus study of the potential risk of ultraviolet (UV) filters on already threatened aquatic environments and the potential consequence to human health should sunscreen usage or composition be modified. NASEMs report reviews the state of science on the sources and inputs, fate, exposure, and effects of UV filters in aquatic environments, and the availability and applicability of data for conducting ecological risk assessments (ERA). It also reviews the epidemiological and clinical literature on the efficacy of sunscreen in preventing UV damage to human skin, the state of knowledge on potential human behavior changes, and the resulting health impacts related to skin cancer prevention from changes in sunscreen usage (e.g., reducing sunscreen use or switching to sunscreens with different active ingredients).

NASEM notes that the scope of the study is limited to the United States. According to the report, there are currently 16 UV filters allowed by the U.S. Food and Drug Administration (FDA) for use in any sunscreen sold in the United States, plus an additional proprietary UV filter, ecamsule, approved for use in limited products. While UV filters are used in a broad range of products, NASEMs scope was to focus on their use in sunscreens. The 16 UV filters include two inorganic UV filters, titanium dioxide and zinc oxide. The summary of the attributes of UV filters relevant for assessment of environmental risk includes the following information for titanium oxide and zinc oxide:

[View source.]

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NASEM Recommends That EPA Conduct Ecological Risk Assessment of UV Filters Found in Sunscreen, Including Titanium Oxide and Zinc Oxide - JD Supra

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Fast and noninvasive electronic nose for sniffing out COVID-19 based on exhaled breath-print recognition | npj Digital Medicine – Nature.com

August 19th, 2022 2:07 am

For the GeNose C19 sensor array, the sensitivity of each sensor during exposure to varying VOC concentrations depends on the used active material. Moreover, the sensor behaviors might be slightly altered when they were tested to the breath samples from different patients, although they were from the same group (either positive or negative COVID-19). This occurrence could be understood because the content and complexity of the exhaled VOCs are diverse, as discovered in another breath analysis study using GCIMS24. Several VOC biomarkers could be identified as the discriminants for distinguishing between positive and negative COVID-19 patients (e.g., ethanal, acetone, acetone/2-butanone cluster, 2-butanone, methanol monomer and dimer, octanal, feature 144, isoprene, heptanal, propanol, and propanal)24. Nonetheless, the compounds observed from two different hospitals (i.e., Edinburgh, the United Kingdom (UK), and Dortmund, Germany) in their study were dissimilar for the same case of COVID-19 patients, which then added more complexity in analyzing the obtained breath data. These limitations were due to uncertainties in the instrument setup, operating conditions, and background contamination levels.

Thus far, a detailed study in those matters has not been performed. Meanwhile, another clinical GCIMS study conducted by researchers in Beijing, China, suggested several other potential breath-borne VOC biomarkers for COVID-19 (i.e., acetone (C3H6O), ethyl butanoate, butyraldehyde, and isopropanol)72. They found that the decrease and increase in acetone (C3H6O) and ethyl butanoate levels, respectively, due to the changes in metabolites resulting from SARS-CoV-2 infections, are distinctive for COVID-19 patients72,73. Moreover, the average measured isopropanol and butyraldehyde for the COVID-19 patients were lower than those for the healthy control and lung cancer and non-COVID-19 respiratory infection patients. The metabolomics of exhaled breaths in critically ill COVID-19 patients were also investigated from a research consortium in France using a proton transfer reaction quadrupole time-of-flight mass spectrometer74. They observed four prominent VOCs (i.e., methylpent-2-enal, 2,4-octadiene, 1-chloroheptane, and nonanal) that could discriminate between COVID-19 and non-COVID-19 acute respiratory distress syndrome patients74. Overall, the reported MS studies in several different countries (i.e., UK, Germany, France, and China) indicate that the distinctive VOC biomarkers for COVID-19 may vary across the world and should be further investigated based on the community, race, and cases with large cohorts75.

In contrast to the MS method that attempts to quantitatively find and identify the exact VOC biomarkers from exhaled breaths, our technique used in GeNose C19 focuses more on the AI-based pattern analysis of integrated sensor responses to complex VOCs, qualitatively resulting from the combined extra-pulmonary metabolic and gastrointestinal manifestations of COVID-1976. Thus, the breath data analysis and decision-making procedure can be performed in a simple way and short time, respectively, with a high detection accuracy. To enable this, besides having a high sensitivity, chemoresistive sensors should ideally be designed to possess a high selectivity to a specific analyte in a gas mixture and zero cross-sensitivity to other compounds in the operating background. Such sensors were normally constructed in hybrid organic/inorganic structures with 3D nano-architectures (e.g., nanofibers, nanowires, and nanofins), enhancing the active surface-area-to-volume ratios77,78. Here, the surfaces of semiconductor nanostructures were often functionalized with certain self-assembled monolayers or polymers to specifically detect the target gas molecules32,34,79. Nevertheless, these organic materials suffer from low robustness. They are all well-known to degrade within a short duration of use (i.e., their chemical compositions will alter downgrading the sensor performance). As a result, pure inorganic materials (metal oxide semiconductors) are still preferably manufactured by sensor companies and widely used in gas sensing applications, including in the GeNose 19 system. Here, a single sensor alone is not sufficient for performing a specific breath pattern recognition because exhaled VOCs might have similar characteristics. This selectivity drawback could be alleviated by employing an array of 10 sensors with different sensitivities and integrating the machine learning-based breath pattern recognition algorithms.

Furthermore, to demonstrate the proof of concept ability of GeNose C19 for detecting VOCs in human breaths, we performed additional sensing assessments for acetone vapors in a modified test setup (see Supplementary Fig. 2). However, COVID-19 itself cannot be detected by simply sensing or measuring the acetone alone. This testing was mainly dedicated to demonstrate that the GeNose C19 sensor array can detect one of the VOCs normally contained in human breaths and exhibits different sensitivity levels when exposed to various gas concentration levels, which also mimics the real case of exhaled breaths from different persons or patients. The gas sensing configuration for the acetone testing, which utilizes a microsyringe for vapor injection, has already been used in our former experiments for other VOC sensor types (e.g., nanofiber-functionalized QCMs for sensing trimethylamine and butanol gases)35,80,81. Acetone was chosen as a VOC model in this additional study because it is not only produced in the rebreathed breath (0.8 to 2.0 ppm)82, along with other VOCs (alcohol) and CO, but is also one of the significant breath-borne COVID-19 biomarkers based on the study by Chen et al.72. Moreover, in clinical practices, breath-containing acetone has been extensively examined to diagnose other diseases (i.e., lung cancer, diabetes mellitus, starvation, and ketogenic diet)83.

As shown in Supplementary Fig. 2b, c, the S3 and S7 sensors (or their extracted features of F3 and F7) demonstrated the poorest responses toward acetone vapors. Conversely, the S2, S8, and S9 sensors exhibited higher sensitivities than the others. The sensor output signals given by the GeNose C19 data acquisition system agree well with those measured by a calibrated digital voltmeter. Increasing the acetone vapor concentrations from 0.04 to 0.1L with 0.02 intervals resulted in higher responses of the three sensors (S2, S8, and S9), whereas the S3 and S7 sensors were irresponsive (see Supplementary Fig. 2d). In particular, each vapor concentration was measured 10 times to acquire quantitative results. Lastly, as depicted in Supplementary Fig. 2e, LDA discriminated the output voltages produced by the sensors during their exposures to four different acetone concentrations (i.e., 0.040.1L).

In terms of ambient conditions, temperature and humidity might influence the performances of metal oxide semiconductor sensors84. Thus, to investigate their effect, we also performed cross-sensitivity assessments in respect to the two parameters for all the employed GeNose C19 sensors (see Supplementary Figs. 3 and 4). This testing is important because depending on the sensitivities of the sensors toward temperature and humidity, the obtained sensor results during the breath analysis can be disturbed, leading to a difficult interpretation of the data. Moreover, if the sensors are too reactive to the two ambient parameters, the measured data can then be unreliable to analyze the effect of VOCs in the human breath because changes in the signals were mainly affected by the temperature and humidity, not the target gases. Such a cross-sensitivity is a common reliability test for gas sensors. For GeNose C19, the environmental effect can be minimalized and controlled by performing two main procedures. First, environmental checking needs to be conducted while placing GeNose C19 in the measurement room/area. Here, the selection of the machine placement (analysis on air circulation, humidity, and temperature) plays a key role in maintaining good-quality results. GeNose C19 could sense the environmental humidity and temperature levels by utilizing humidity and temperature sensors integrated inside the system. The measurement was displayed in the program interface. Hence, the user or operator could notice the condition. In a real situation during breath sampling, the machine could only be operated if the humidity and temperature inside the chamber were in the ranges of 3050% and 2642C, as defined by the AI-based program in the system. Such a setting is adjustable to meet future demand and placement environments. Second, after checking the environmental condition, the baseline normalization protocol during the sample analysis can be done (see Methods on the GeNose preconditioning). During the AI interpretation of the VOC patterns, several protocols were employed, including signal baseline normalization. By performing baseline normalization, all the sensors that behaved and started from different baselines in different environments can always be calibrated to the standard normalization. Hence, the adaptability of the machine can be improved in new foreign environments.

In the case of acetone testing, the sensors yielded similar responses from three repeated measurements, indicating their reliable sensing results. The sensor resistance decreased (i.e., a higher output voltage was obtained) when the temperature was ramped up from 40C to 46C, and the humidity was kept stable at (30%1%) RH (see Supplementary Fig. 3). Different from silicon micromechanical resonant sensors that have frequency shift interferences caused by the temperature-induced Youngs modulus change (material softening)37,85, the resistance decrease in the employed metal oxide semiconductor sensors (e.g., n-type SnO2 with a bandgap of 3.6eV) at high temperatures was caused by the increasing number of electrons that have sufficient energy crossing to the conduction band and thus contributing to the conductivity86. Because this is a natural characteristic of semiconductor materials, we could overcome this effect in GeNose C19 by controlling the temperature inside the test chamber at relatively stable values (i.e., (42C2C)) during the sensing phase of the exhaled breath.

Similar to the trend shown in the cross-temperature test, the sensor resistance also dropped to a lower value, resulting in a higher output voltage when the relative humidity was raised from 30% to 35% and the temperature was set constant at (40C1C) (see Supplementary Fig. 4). The electrical characteristics of metal oxide semiconductors changed due to the water adsorption on their surface while being exposed to humid air. Two different mechanisms of chemisorption and physisorption processes took place to create the first layer (i.e., chemisorbed layer) and its subsequent films of water molecules (i.e., physisorbed water layers), respectively87. If the first chemisorbed layer has been formed, then the successive layers of water molecules will be physically adsorbed on the first hydroxyl layer. Because of the high electrostatic fields in the chemisorbed layer, the dissociation of physisorbed water can easily occur, producing hydronium ion (H3O+) groups. Here, the conduction mechanism relies on the coverage of adsorbed water on the metal oxide semiconductor. First, in the event only hydroxyl ions exist on the metal oxide surface, the charge carriers of protons (H+) resulting from hydroxyl dissociation will hop between adjacent hydroxyl groups. Second, after the water molecules have been adsorbed but not fully covered the oxide surfaces, the charge transfer will be dominated by H3O+ diffusion on hydroxyl groups, despite the occurring proton transfer between adjacent water molecules in clusters. Finally, once the continuous film of the first physisorbed water has been formed (i.e., full coverage of metal oxide by the physisorbed water layer), proton hopping between neighboring water molecules in the continuous film will be responsible for the charge transport88. More detailed explanations of the sensing mechanism and adsorption of water molecules on metal oxide semiconductor surfaces are described elsewhere84,87,88. Again, in the conducted cross-sensitivity measurements (Supplementary Fig. 4), the signal changes of the GeNose C19 sensors affected by humidity are relatively lower (i.e., <100mV) compared to those exposed to exhaled breaths (i.e., ~1V, as shown in Fig. 3a, b). Thus, temperature and humidity will insignificantly influence the system performance during breath measurements, when GeNose C19 has been well preconditioned.

To confirm the performance of our GeNose C19, RT-qPCR was used as the reference standard on the basis of the health service standard protocol underlined by the Indonesian Ministry of Health. Based on the analysis of the RT-qPCR protocol using Bayes theorem, RT-PCR tests cannot be solely relied upon as the gold standard for SARS-CoV-2 diagnosis at scale. Instead, a clinical assessment supported by a range of expert diagnostic tests should be used. Here, although our study mentioned that RT-qPCR was used as the reference standard, clinical data from each patient were also collected and analyzed.

According to a recently published systematic review study, the need for repeated testing in patients with suspicion of SARS-Cov-2 infection was reinforced because up to 54% of COVID-19 patients might have an initial false-negative RT-qPCR89. Meanwhile, in the case of false-positive rates of RT-qPCR, much lower values (i.e., 016.7% with an interquartile range of 0.84.0%)90,91 were exhibited in several studies, which were affected by the quality assurance testing in laboratories. Public Health England also reported that RT-qPCR assays showed a specificity of over 95%, so up to 5% of cases were false positives91. Moreover, the overall false-positive rate of high throughput, automated, sample-to-answer nucleic acid amplification testing on different commercial assays was only 0.04% (3/7,242, 95% CI, 0.01% to 0.12%)92. False-positive SARS-CoV-2 RT-qPCR results could originate from different sources (e.g., contamination during sampling, extraction, PCR amplification, production of lab reagents, cross-reaction with other viruses, sample mix-ups, software problems, data entry errors, and result miscommunication)93. In our case, all the bought and used reagents were checked and calibrated daily to avoid false positives (i.e., no false positive of RT-qPCR result was found in this study). Meanwhile, the false-negative of the RT-qPCR result was found in three patients in their first examination, but positive results were revealed on the second examination the next day. Again, the detailed test procedure can be found in the Methods.

Currently, diagnostic methods used to screen COVID-19 are antigen test, rapid molecular test, and chest CT scan. Antigen tests have an average sensitivity of 56.2% (95% CI: 29.579.8%) and average specificity of 99.5% (95% CI: 98.199.9%)94. The average sensitivity and specificity for the rapid molecular tests are 95.2% (95% CI: 86.798.3%) and 98.9% (95% CI: 97.399.5%), respectively94. Meanwhile, chest CT scan possesses an average sensitivity and specificity of 87.9% (95% CI: 84.690.6%) and 80.0% (95% CI: 74.984.3%), respectively95. Nonetheless, these diagnostic methods have their drawbacks. The average sensitivity of antigen tests is not high, as shown by the study above, and it declines when the viral load decreases, which often happens to COVID-19 patients. Moreover, the sample collection is invasive (by a nasopharyngeal or oropharyngeal swab). Rapid molecular testing also employs an invasive sample collection method (by a nasopharyngeal or oropharyngeal swab), and the turnaround time of point-of-care rapid molecular tests still takes at least 20 min96. Moreover, chest CT scan exposes patients to radiation and is not specific.

Compared to these diagnostic methods, GeNose C19 has the potential to be a screening test. A breath test with the portable GeNose C19 is noninvasive and easy to use because it only requires patients to breathe into a sampling bag with minimal preparation, has a fast analysis time, and does not have radiation concerns. Similar to other biological samplings in several laboratory examinations (e.g., blood glucose sampling and chemical blood analysis), GeNose C19 also requires preparation of subjects before breath sampling, such as fasting (i.e., refraining from eating, smoking, or drinking anything other than water at minimum 1h before sampling). However, the duration of the analysis starting from the breath sampling to the test result decision only takes ~3min. The sensitivity and specificity results of GeNose C19 from the profiling tests show that combining GeNose C19 with an optimum machine learning algorithm can accurately distinguish between positive and negative COVID-19 patients. Hence, it opens an opportunity for using this developed breathalyzer as a rapid, noninvasive COVID-19 screening device based on exhaled breath-print identification.

Several factors may influence breath-prints, i.e., pathological and disease-related conditions (smoking, comorbidities, and medication), physiological factors (age, sex, food, and beverages), and sampling-related issues (bias with VOCs in the environment)97. A previous study revealed that older age altered breath-prints in patients with lung cancer98. There were concerns that several other respiratory diseases may present similar VOC patterns to those from the COVID-19. Several studies reported that several comorbid and confounding factors (e.g., chronic obstructive pulmonary disease, asthma, tuberculosis, and lung cancer) might affect the composition of VOCs99,100. Thus, patients with other respiratory diseases can have different patterns of VOCs that result in different sensor signals, suggesting that the electronic nose may still determine the COVID-19 infection to a certain degree by continuing to train its AI database in reading VOCs from confirmed positive COVID-19 patients. Our studies showed no significant difference in the detected sensor signal patterns of patients with comorbidities compared to those without comorbidities. Nonetheless, due to the few comorbid cases obtained in our subjects, which could be considered the limitation in our current study, the influence of existing comorbidities on the VOC pattern cannot be concluded and will be further evaluated in the next research.

Food and beverages (e.g., poultry meat and plant oil) can influence breath-prints, whereas smoking may increase the levels of benzene, 2-butanone, and pentane and simultaneously decrease the level of butyl acetate in exhaled breaths101,102,103. In our study, none of the patients was smoker. The comorbidities were also comparable between the case and control groups. There was no significant difference in the consumption of food and beverages between the two groups. The measurements were conducted in the same environment for all the participants. Thus, there was no bias with other interfering VOCs.

However, the possible presence of physiological variations resulting from physiological and biochemical changes in the body due to alterations in the respiratory rhythm affected by the manipulated breathing technique should also be considered61. Therefore, in our work, breath sampling was performed in such a defined protocol to collect only the third exhaled end-tidal breath. Accordingly, the natural breathing pattern and rhythm can be preserved, resulting in minimal changes in VOCs. We avoided excessive effort or repeated sampling in each breath collection as previous studies reported that it might alter the quality of collected VOCs104. The disturbance from other factors to breath test results is minimal. However, such confounding factors are most likely present in the real implementation and can affect at least breath-prints to a certain degree. Further study is now being conducted to reveal the effects of various confounders.

Our study using GeNose C19 did not evaluate the distinctive concentration of each VOC found in breath samples of patients with positive or negative COVID-19. However, to investigate the types of VOCs produced in exhaled breaths of the positive and negative COVID-19 patients, we conducted another characterization based on GCMS for several exhaled breaths of patients (see Supplementary Table 3). In the extracted results, there was no significant difference in the composition of VOCs between patients with positive and negative COVID-19, suggesting that the difference in the breath-print pattern may be contributed by the variation in the concentration or proportion of several VOCs rather than the presence of one or two signature VOCs. For example, acetone was reported to be one of the VOCs with the highest concentration emitted by healthy humans104. However, in COVID-19-positive patients, acetone was reported to be in a lower proportion, compared to the healthcare worker or healthy control group72. Meanwhile, another VOC (i.e., ethyl butanoate) has been reported as one of the signature VOCs in COVID-19 patients, whose concentration is slightly higher compared to the healthy control72.

Anosmia (i.e., the olfactory system cannot accurately detect or correctly identify odors) is one of the most frequently identified COVID-19 symptoms45,105. CO has been linked with this issue because it is an olfactory transduction byproduct related to the reduction of cyclic nucleotide-gated channel activity that causes a loss of olfactory receptor neurons45,106. In our GCMS results (Supplementary Table 3), six sensors in GeNose C19 (i.e., S1, S3, S4, S5, S6, and S8) could detect CO. Aside from CO, the GCIMS studies in Dortmund, Germany, and Edinburgh, UK indicated that aldehydes (ethanol and octanal), ketones (acetone and butanone), and methanol are biomarkers for COVID-19 discrimination24. This result is however different from the finding from another research group in Garches, France, using the proton transfer reaction quadrupole time-of-flight MS, where four types of VOCs (i.e., 2,4-octadiene, methylpent-2-enal, 1-chloroheptane, and nonanal) could discriminate between COVID-19 and non-COVID-19 acute respiratory distress syndrome74. Studies conducted in two cities in the USA (Detroit, Michigan and Janesville, Wisconsin) by Liangou et al. reported another set of eight compounds (i.e., nitrogen oxide, acetaldehyde, butene, methanethiol, heptanal, ethanol, methanol-water cluster, and propionic acid) as key biomarkers for the COVID-19 identification in human breath. Moreover, in Leicester, UK, seven exhaled breath features (i.e., benzaldehyde, 1-propanol, 3,6-methylundecane, camphene, beta-cubebene, iodobenzene, and an unidentified compound) measured by the desorption coupled GCMS were employed to separate RT-qPCR-positive COVID-19 patients from healthy ones107. In our measurement, camphene was detected only in the negative COVID-19 breath sample by S10.

Furthermore, Chen et al. reported two sequential GCMS studies in Beijing, China, that resulted in totally different breath-borne biomarkers for COVID-19 screening, despite using the same measurement approach72,108. Their first measurement reported in 2020 indicated that COVID-19 and non-COVID-19 patients could be differentiated by solely monitoring three types of VOCs (i.e., ethyl butanoate, butyraldehyde, and isopropanol)72. Nonetheless, in their second report in 2021, acetone was detected as the biomarker among many VOC species because its levels were substantially lower for COVID-19-positive patients than those of other conditions73. In our GeNose C19 sensor array, acetone can be detected in S8109. Recently, ammonia has also been proposed as another biomarker for COVID-19, whose relation to complications stemming from the liver and kidneys was affected by the SARS-CoV-2 infection110.

In all the already described examples of MS studies worldwide, the identification and determination of specific COVID-19 biomarkers in breath clearly remain challenging. Here, different discriminant compounds can be yielded depending on several parameters (e.g., measurement technique, filtering approach, location, and breath sample type). Nonetheless, we can still extract some information from our GCMS results (Supplementary Table 3). A hydrocarbon of ethylene was sensed by S10 in the positive COVID-19 breath sample. Meanwhile, for the negative COVID-19 breath samples, other hydrocarbons (i.e., butyl aldoxime, decane, and benzene) were detected by S10. Furthermore, S2 and S9 could measure a few specific esters (i.e., benzoic acid, 3-hydroxymandelic acid, and acetic acid) in the negative COVID-19 samples. Generally, the appearances of the three sensors (S2, S9, and S10) were dominant as compared to those of the others. For instance, S2 and S9 were highly sensitive toward aldehydes and esters, whereas S10 was likely to be reactive toward hydrocarbons.

Regardless of the successful compound extraction and its association with GeNose C19 sensor array, our GCMS characterization was only performed in a low number of samples. Therefore, a further investigation with a larger number of breath samples still requires to be carried out in the near future to correlate the measurement results of GeNose C19 and GCMS methods in a more thorough way, especially in Indonesia. This method also includes more investigations on the possible influence from other respiratory-related viruses (e.g., influenza, respiratory syncytial virus, and rhinovirus). The presence of viruses other than SARS-CoV2 will affect the VOC profile in breaths to a certain degree. However, in our current setup, it will be mostly recognized by the AI algorithm in GeNose C19 as non-reactive, which means that it contains VOC-based breath-prints not typical to a SARS-CoV2 infection. Influenza and rhinovirus infections manifest a high amount of heptane, nitric oxide, and isoprene111. Consistently, our preliminary study on breath samples from a few patients confirmed to have rhinovirus based on RT-qPCR and showed a high response on S8, suggesting a high amount of isoprene or isopropanol. However, further comparison analysis with more numbers of validated breath samples data will be definitely necessary to obtain a solid conclusion on this matter.

In terms of the enhanced sensing technology, once the VOC biomarkers can be clearly determined, a molecular imprinting method could be applied to generate highly selective sensors that target these specific VOC markers. Hence, the sensitivity and specificity of GeNose C19 and its overall accuracy can be further improved. Another critical step for the system development is to conduct a diagnostic test with a large cohort to strongly elucidate its potential as a diagnostic tool in the near future.

Other limitations of our study are that a direct correlation between the level of the virus gained from the swab and the amount of VOC concentration could not be drawn. These conditions are partly caused by the fact that VOCs were not directly produced by the virus, but rather by host cells infected by the virus as a part of their metabolic response to the infection. GeNose C19 could only predict the presence of the virus based on the resulting VOCs in the breath produced by respiratory tract epithelial cells and immune cells that were infected by the SARS-CoV2 virus. Nevertheless, a study on the correlation between the positivity rate of breath results and level of the cycle threshold value (Ct value) gained from RT-qPCR examination has been of interest for the next research. Here, more insights into the performance of GeNose C19 will be gained in terms of sensitivity, specificity, and accuracy levels correlated with the level of Ct value of RT-qPCR. The Ct value itself is currently accepted as an alternative parameter to determine the level of the viral load in each individual on the basis of the minimum cycle threshold necessary to duplicate the viral component to be read. Nonetheless, GeNose C19 combined with RT-qPCR using the Ct value has a limitation for estimating the exact number of the viral load. It was also a question of whether a person with a positive PCR test result for SARS-CoV-2 is automatically infectious or infectious only if the Ct value is below a certain limit (e.g., Ct value of <35)112,113. In another study, knowing the typical viral load of SARS-CoV-2 in bodily fluids and host tissues, the total number and mass of SARS-CoV-2 virions in an infected person could be estimated114. Each infected person carries the total number and mass of SARS-CoV-2 virions of 1091011 virions and 1100g, respectively, during the peak infection114.

Again, this study was meant to demonstrate a proof of concept that breath sampling and detection can be used to predict COVID-19 infection. Essentially, the calculated performance values in our study show the reliability of the DNN algorithm in predicting the training and testing data of breath samples, suggesting the great potential of the GeNose technology, fortified by the DNN algorithm to be used as a COVID-19 screening tool. Here, we performed the study using a so-called open-label design, where we already knew the COVID-19 status of the subjects before conducting sampling and classifying the sampled data into case and control groups. Using this method, we read, found, and compared the breath sample pattern profiles in each respected group and employed them as training data to build our first AI database, in which all data were validated by the test results of RT-qPCR supported with clinical data. A combined measurement of GeNose C19 with GCMS will be conducted in the near future to answer questions related to distinctive VOCs for COVID-19.

Lastly, another critical step for the system development is to confirm the usability and performance in the clinical setting, where a study on the clinical diagnosis of COVID-19 with a larger number of exhaled breath samples is currently performed to prove the potential of GeNose C19 as a rapid COVID-19 screening tool using a cross-sectional design and double-blind randomized sampling. Here, breath samples and nasopharyngeal swab specimens are taken in the situation where the operator or sampler does not know the true condition of patients. A double-blind fashion means that neither the sampler nor subjects know their true condition during the sampling process. The breath samples were analyzed by GeNose C19 without knowing the result of RT-qPCR, and swab samples were examined by RT-qPCR without prior knowledge of the GeNose C19 result. Both results were then compared to each other to draw a conclusion. In this approach, RT-qPCR will still be used as the reference standard.

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Have Insurers Paid Too Much for Asbestos and Other Toxic Torts? – Claims Journal

August 19th, 2022 2:06 am

Have insurers and defendants been overpaying for asbestos liability claims? Are there other ongoing toxic torts where that might be true today?

The questions arise as a result of a revolution thats now underway in genomic analysis and its application in civil litigation.

Genomic analyses of molecular data can allow medical scientists to identify an individuals genetic propensity to develop cancers like mesothelioma and other conditions. Beyond that, the frequency with which genomic analyses have been used in personal injury casesby both plaintiffs and defendantsis increasing rapidly.

How It Started

An early, impressive use of genomic analysis was in Bowen v. E.I. DuPont de Nemours & Co., 906 A.2d 787 (2006). There, children were born with heart-rending deformities, including malformed eyes. The claim was that fungicide exposure caused the deformities.

Shortly before trial, newly published, peer reviewed research showed that a pathogenic mutation to a particular gene (CHD7) could be the cause of the deformities, independent of any exposure to the fungicide. Genetic testing revealed the children at issue in fact carried pathogenic mutations to the CHD7 gene.

Ultimately, the genetic testing results caused plaintiffs experts to withdraw their prior opinions on causation, and so summary judgment was entered for the defendant fungicide maker.

Since then, there have been numerous orders around the country requiring some amount of genetic testing in a wide range of cases; the orders usually are in cases involving claims of medical malpractice, product liability and negligence. There have been some state-to-state variations and some denials of genetic testing, mainly when counsel did not make a detailed record. And some plaintiff lawyers undertake their own genetic testing before investing heavily in a case or make arguments based on the results of genetic tests.

The Asbestos Question

Many insurance claims professionals have been conditioned to think that virtually anyone who encountered asbestos in their career or life, and subsequently developed mesothelioma, probably had their disease caused by that exposure. Advances in genomics now reveal, however, that this is not necessarily true.

In fact, genomic analyses have scientifically established that a meaningful percentage of mesotheliomas are caused solely by genetic mutations, a fact that holds true for virtually all cancers. Those scientific findings are now reshaping expert testimony in mesothelioma litigation. In very recent deposition testimony (May and June of 2022) a genetic expert often called by plaintiffs (Dr. Joseph Testa) finally acknowledged that, in fact, some mesotheliomas are caused solely by genetic abnormalities.

That overdue acknowledgement arose from multiple factors:

But have insurers been overpaying on asbestos liability claims?

The answer is complicated by group settlements and the fact that there are so many repeat players in mesothelioma cases, thereby inducing trade-offs between cases. In short, yes, settlement payments have been made in some cases where asbestos causation was highly dubious or implausible. And importantly, there soon may well be bad faith claims against insurers who fail to fund genomic defenses in appropriate cases.

Genomic analyses can be highly effective in both mass tort and individual cases. Genomic analysis reports are unique to each person, and so costs are higher than costs for generic reports that have been used hundreds of times over many years and that include only a few paragraphs specific to the person. The costs for genomic analyses, however, are relatively small when compared to the potential jury verdicts in cases involving a person under 60 who has a terminal, painful cancer, especially in view of todays so-called nuclear verdicts. Logically, this potential for outsized verdicts compared to the cost of genomic defenses could fuel bad faith claims against insurers going forward.

The Economics: When to Use Genomic Analyses

Still, the question of precisely when it becomes economical to pursue genomic analysis as part of a defense doesnt have a clear-cut answer.

Genomic defenses are credible and appropriate only in some cases. An initial step is to look for the presence or absence of red flags (a term of art in the genetics literature) that suggest the likely or possible presence of pathogenic hereditary mutationsfor example, personal and family histories of cancer. For defendants, the presence of red flags can suggest investing in genomic analyses for high-value cases or to send a message to plaintiffs counsel to discourage suits against a defendant that does not belong in the case. Consider the math when the plaintiff has targeted only one or two defendants, the plaintiff is relatively young and successful, and counsel is seriously demanding eight-figures to settle the case.

Tsunamis Ahead

Hundreds of thousands of whole genome sequences, linked to anonymized medical data, are on the cusp of arriving at researchers doorsteps with the prospect of transforming both the scientific and legal systems.

Insurers need to understand the speed and scale of advances in this genomic knowledge. The next 10 years will bring multiple tsunami waves of genomic information. The first tsunami arrived last year with a UK groups release of 200,000 whole genome analyses, accompanied by anonymized medical records. Another tsunami will arrive in 2023 with the same groups release of an additional 300,000 whole genomes and anonymized medical records.

Assured Research LLC, a research and advisory firm focused exclusively on the P/C insurance industry, has been working with Law Science Policy law firm since 2015, when the two firms joined forces to describe the scientific, medical, and legal developments shaping a possible third wave of asbestos liabilities. (Related 2015 article, Genetic Markers May Fuel Next Wave of P/C Insurer Asbestos Reserve Hikes)

Since then, William Wilt, president of Assured Research, and Kirk Hartley, founder and principal of LSP, have spoken about these developments to actuarial and insurance audiences, hoping to impress upon insurance professionals the imperative of understanding the revolution now underway in genomic/medical analysis and its application in civil litigation. Hartley also teamed up with a multidisciplinary group of scientists and lawyers to create ToxicoGenomica, which provides fully integrated services for using genomic and systems biology data in civil litigation. ToxicoGenomica scientists have recently published articles showing that mesotheliomas and other cancers can be caused solely by genetic abnormalities, rather than by exposure to asbestos and other substances.

As a result of that research, and forthcoming waves of genomic data that will fuel more research in the next few years, Wilt and Hartley believe that insurers can no longer delay decisions to invest time, effort and money in understanding the application of genomic analysis to civil litigation. They delivered their urgent message is an Aug. 16, 2022, research note, Liability Insurance: Invest in Genomics Now, the Future is Arriving, published by Assured Research. The research note is presented in the form of a Q&A style discussion, with Wilt asking the questions and Hartley supplying the answers.

The accompanying article has been adapted from that research note with permission from the authors.

The tsunamis will continue as more whole genomes and medical records are released from government programs or other databases (see the chart for examples).

The medical records and genomes are now being mined, and disease-specific papers are now being released that far more reliably link specific genes to specific diseases, while other papers show gene/environment interaction. These genomic epidemiology papers in some instances will exonerate defendants and other times will support plaintiffs. Both outcomes create risks of major surprises for stakeholders who are not tracking genomic science as it advances. Stakeholders and lawyers need to start thinking about how they are going to cope with so much risk of a rapid change, and the fact that new knowledge will 1) effect pending claims, 2) may stimulate new claims, and 3) will influence underwriting considerations.

Even though the use of genomics could work for, or against, the defense (e.g., maybe it shows that a toxin was highly likely to have caused the plaintiffs disease), the best move for insurers is to engage early and intelligently in order to avoid extreme surprises. Simply put, the availability of massive amounts of anonymized medical records and matched genomic data is a never before event, and so existing actuarial models simply cannot be as reliable as they are for many other risks. The arrival of genomic epidemiology will not impose surprises and changes as fast or as broadly as did the arrival of COVID. But it seems realistic to suggest the need to manage change and the new data, perhaps by analogizing to the recent development of new forms of extreme weather models based on data and analytic methods that were not available 10 or even five years ago.

The volume of data truly will arrive in tsunamis, and the impact will be highly material for some toxicants. Actuaries simply will not find workable prior models; new methods and models are needed to better manage the changes that will arrive with hundreds of thousands and then millions of anonymized medical records and associated genomic data.

We cant predict the path or exact ramifications of the tsunami of genomic/medical data to be released over the upcoming decade. But, with great confidence, we can predict that insurers sticking their head in the sand take the risk of surprises and outcomes that could have been avoided.

The time has arrived to invest resources and, yes, money in understanding this scientific revolution and its ramifications for the liability landscape.

The accompanying article has been adapted from a Aug. 16, 2022 research note titled Liability Insurance: Invest in Genomics Now, the Future is Arriving, published by Assured Research. Wells Media is publishing with permission from the authors.

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Restrictive abortion laws are limiting the options parents have after receiving genetic test results, experts say – Yahoo Singapore News

August 19th, 2022 2:06 am

During a pregnancy, women are offered prenatal genetic screening and diagnostic testing to determine whether a fetus is healthy or has certain genetic disorders or anomalies.

This information can help patients and their doctors prepare for the pregnancy. But some opt out of such testing, believing that babies should be born regardless of potential abnormalities.

For those who do choose to undergo such testing, maternal-fetal medicine specialists and genetic counselors usually work closely with the pregnant person or couple to explain in detail what the results mean for a birth, for mother and child, if a genetic disorder or fetal anomaly is detected. These health care providers can also provide the pregnant person or couple with guidance on what options are available to them after a diagnosis, which can include aborting apregnancy. That option, however, is limited or no longer available to women in many U.S. states.

Prenatal tests cant diagnose a genetic condition before 6 weeks

Without the protection of Roe v. Wade, the 1973 Supreme Court decision that legalized abortion nationwideand was overturnedin June, the procedure has become illegal or heavily restricted in at least 14 states. Six states Mississippi, Missouri, Tennessee, North Dakota, South Dakota and Ohio prohibit abortions when the fetus may have a genetic anomaly, and infive of those states, its now nearly impossible, because it is banned at about six weeks. This is so early in a pregnancy that many women at that point dont even know they are carrying a child.

A person's first [doctors] appointment in pregnancy doesn't usually happen until eight or 10 weeks, so never mind the rest of the story. That's when obstetric care begins, said Philip D. Connors, lead genetic counselor at Boston Medical Center.

Three [percent] to 4% of all pregnancies are going to be affected by some sort of complication related to a difference in fetal or embryonic development, a genetic condition. And essentially none of those can be screened for or diagnosed until after the gestational age limits that are being placed by some of these really discriminatory laws, Connors added.

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Dr. Tani Malhotra, a maternal-fetal medicine specialist in Cleveland,Ohio, a state where abortions are now illegal after six weeks and where there are no exceptions for cases of rape, incest or fatal fetal anomalies, said it is impossible to assess whether there are any issues with the fetus at such an early point in pregnancy.

The size of the embryo at six weeks is somewhere between 6 to 7 millimeters. It's less than 1 centimeter, and that centimeter is like the size of my finger, right? So it's just impossible for us to be able to detect abnormal findings on an ultrasound at that point, Malhotra said.

KatieSagaser, director of genetic counseling at Juno Diagnostics, a women's health company, told Yahoo News: Theres no genetic testing or screening that can be done prior to six weeks.

One method of testing which she said has revolutionized the landscape of prenatal chromosome screening and is mostly used today is a noninvasive prenatal screening technology known as NIPT or NIPS. This can detect genetic variations as early as nine weeks into pregnancy, using a blood sample from the mother. But the test, Sagaser said, can only indicate if there is a potential problem, and does not replace diagnostic testing, such as chorionic villus sampling (CVS) or amniocentesis, which study the cells from the fetus or placenta and can confirm a diagnosis.

The earliest a CVS diagnostic test can be performed is at the 10th week of pregnancy. Amniocentesisis usually conducted at between 15 and 20 weeks of pregnancy, but can technically be done up until a person gives birth, according to the American College of Obstetricians and Gynecologists.

WASHINGTON, DC - JUNE 24: Abortion-rights activists gather in front of the Supreme Court building following the announcement to the Dobbs v Jackson Women's Health Organization ruling on June 24, 2022 in Washington, DC. (Photo by Nathan Howard/Getty Images)

Aborting a pregnancy because of genetic anomalies

As prenatal screening testing like NIPS has become more common, selective terminations involving genetic conditions have too. Some studies have shown that parents often decide to terminate a pregnancy, even after finding a mild form of a genetic condition, including Turner and Klinefelter syndromes.

Down syndrome is the most common chromosomal disorder in the U.S., and about 6,000 babies are born with it in the U.S. each year, according to the Centers for Disease Control and Prevention.

A published review of studies, which included 24 publications studying pregnancy terminations after a prenatal diagnosis of Down syndrome in the U.S., found that 67% ofthose pregnancies end in abortion.

Terminating a pregnancy after the 2nd trimester because of medical complications

Its notable, however, that the majority of abortions in the U.S.(91%) occur at or before 13 weeks of gestation. Abortions late in pregnancy are rare,butMalhotra said some of the main reasons why they do happen include delays and other barriers in obtaining abortion care, or after discovering medical complications. Those complications often include the discovery of lethal fetal anomalies, which can be detected during a fetal anatomy scan that is usually performed at around 20 weeks of pregnancy. Terminations at this stage, Malhotra said, are difficult and traumatic, because these pregnancies are often desired.

It's really tragic, as you're telling these patients who have been continuing their pregnancy. They're at 20 weeks. They're excited about the pregnancy. They're planning their baby showers. They come to that ultrasound hoping to be able to find out the sex of the baby and you tell them this devastating news, that there is an abnormality that is either not compatible with life, or is going to have significant impact on the quality of life after birth, the Ohio doctor said.

Malhotra told Yahoo News that Ohios new abortion law has made her job even tougher, because she also has to tell patients in these situations who wish to terminate the pregnancy that they cannot receive such care in their state.

It is just horrible, because not only are you giving them this tragic, heartbreaking news, but you're stigmatizing their care, because you're saying, Oh, this thing is illegal here, but you could go to another state. So they have to travel to another state to do something that's illegal, which is a part of medical care, Malhotra said. If they're not able to go out of the state, then we're asking them to take on risks associated with a pregnancy, which we know inherently, pregnancy is not risk-free.

In addition, she explained, she needs to inform these patients that they must act rapidly. Abortions later in a pregnancy are more complex and also more expensive. Medication abortion, which can be taken at home, can only be safely used in the first 70 days, or 10 weeks of pregnancy. After that, women need a surgical abortion, which typically takes about two days and requires inpatient care. A patient who needs to go out of state to receive care must therefore also take into account additional costs related to travel and lodging.

Because of the abortion bans that have gone into effect in the Midwest, surrounding states where the procedure is protected have seen an increase in patients, Malhotra said. They are really backed up, currently complicating the scheduling of an abortion, she said.

Another important reason to act quickly in these situations, according to Malhotra, is because most states do not permit abortions after 24 weeks when a fetus has reached viability and can survive outside the uterus. According to the Guttmacher Institute, a research group focused on reproductive health, 17 states impose a ban at viability.

Little research has been conducted on what happens to women who are unable to terminate a pregnancy because of a fetal genetic condition or anomaly. However, one study conducted by the University of California, San Francisco, that tracked 1,000 women unable to get an abortion because they had passed the gestational limits, found they were more likely to fall into poverty, as well as have worse financial, health and family outcomes, than those who had terminated their pregnancies.

Opponents of abortions conducted as a result of screening for disabilities believe that such procedures are unjust, because all human beings have inherent value from the moment of conception. Malhotra, on the other hand, told Yahoo News that she finds it absolutely horrible to put patients in a position where they dont have a choice anymore.

There are multiple reasons women may choose to terminate a pregnancy because of a genetic condition or anomaly, ranging from the emotional and financial cost of raising a disabled child to the effect that this may have on the existing children in a family, as well as the feeling that it is cruel to give birth to a child who may need a lifetime of constant medical intervention.

Connors said that terminations due to genetic or fetal anomalies are comparatively rare, but are often emphasized unduly in conversations on abortion and abortion care. It inadvertently leads to a narrative about what makes a good or a bad abortion, he said.

Sagaser agreed, saying:There's no benefit to us as a society to say, Oh, there's this one population that really needs access to abortion care more so than other people.'

Everyone deserves to be able to make the choices that are right for them and their family in that unique situation, she added.

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Neurologists Discuss the Impact of Roe v. Wade Reversal on… : Neurology Today – LWW Journals

August 19th, 2022 2:06 am

Article In Brief

Neurologists who see patients with neurologic conditions who are pregnant, or who are considering pregnancy, said the Supreme Court decision to reverse Roe v. Wade, the right to an abortion, interferes with their ability to provide informed decisions about health care for their patients.

Neurologists who care for patients who are pregnant, or who are planning pregnancies, are facing new discussions about clinical care in the wake of the Supreme Court's June 24 Dobbs v. Jackson Women's Health Organization decision to reverse the historic Roe V. Wade 50-year precedent to legalize abortion.

Neurologists have a critical window into how the reversal of Roe will impact patients with neurologic disease. Neurologic health is inextricably linked with reproductive health, said Sara LaHue, MD, a neurohospitalist and assistant professor of clinical neurology at the University of California, San Francisco.

...Bans on abortion will immediately affect the delivery of current standard neurologic care for many patients, specifically standards that depend on planning or preventing pregnancies using individual choice, Dr. LaHue and colleagues wrote in a viewpoint on the impact of the Dobbs decision on neurology in the July 13 issue of JAMA Neurology article.

I dare say that there are very few specialties within neurology that don't have some connection to how reproductive health influences the health of our patients, said Diana Cejas, MD, MPH, a child neurologist who specializes in autism spectrum disorders, intellectual disabilities, and neurodevelopmental disabilities.

As a pediatric neurologist, I talk about these issues with my patients all the time: the risks of certain medications to a developing fetus, the need to be on birth control, what it would mean for them if they got pregnant. There are all kinds of implications for reproductive health that we are involved with as neurologists. We have patients with significant illnesses and chronic disability within neurology, for whom pregnancy could be devastating if not life-threatening. This decision is absolutely going to affect our patients' health and the way we practice.

Many neurologic conditions that commonly affect women in their reproductive years, including epilepsy, migraine, multiple sclerosis, myasthenia gravis, and brain tumors, are often managed with medications that are known to be teratogenic, with many more lacking clear evidence about their teratogenicity.

As an epileptologist, I see many patients who are on antiseizure medications known to be teratogenic, such as valproic acid, said Ima Ebong, MD, an assistant professor of neurology at the University of Kentucky.

We have conversations about reproductive health and what the consequences of these medications can be, weighing the pros and cons of treating your epilepsy and the protections you need to put in place for yourself and potentially a pregnancy, including barrier contraception, hormonal contraception, and having the ability to abort a pregnancy if necessary. Not every patient wants to use contraception, even though we recommend it; none of the methods are 100 percent effective, and many antiseizure medications lower the efficacy of contraceptives, so it is unavoidable that some people will become pregnant while on these medications. With the reversal of Roe, in some states women no longer have the ability to make these decisions for themselves, and I think it's inevitable that we will see increases in serious birth defects as a result.

Similarly, both the National Multiple Sclerosis Society and the Food and Drug Administration recommend discontinuing the use of most disease-modifying therapies (DMTs) for multiple sclerosis while trying to conceive, during pregnancy, or breastfeeding.

Glatiramer acetate and interferon beta are thought to be the safest of the DMTs, so if a woman wants to get pregnant with active disease, in rare situations a neurologist might leave a woman on one of those therapies, but they are modestly effective compared to the highly effective newer agents, said Amy Hessler, DO, FAAN, who recently left her position as director of women's neurology at the University of Kentucky to establish a women's neurology clinic in Jacksonville, FL.

Teriflunomide is the worst oneif accidental pregnancy occurs while on this agent, the medication is immediately stopped and a rapid elimination procedure is required urgently, as well as counseling [for] the mother about the increased risk of teratogenicity. Dimethyl fumarate should be stopped at the same time the woman stops contraception, due to uncertain but potential risks. Fingolimod is also associated with increased risk of adverse fetal outcomes. There are pregnancy registries associated with all these medications to make the best treatment decisions. Also, there is risk to the woman of rebound relapse if she is rapidly taken off her MS medication, particularly with fingolimod and natalizumab. It can be hard to get it back under control and it can even be life-threatening.

If one of our patients were to become pregnant while on any of these medications that can cause severe teratogenic effects, there are currently no options for them in Texas, said Audrey Nath, MD, PhD, a pediatric epileptologist and clinical assistant professor of neurology at the University of Texas Medical Branch in Galveston.

Concerns about legal restrictions or even prosecution for the use of these medications in a patient's reproductive years could potentially lead neurologists to be restrictive in their prescribing of appropriate therapies, Dr. LaHue and coauthors suggested in the JAMA Neurology article.

In a climate of increased limitations on reproductive rights, whereby pregnancies cannot be reliably timed or prevented, neurologists might possibly restrict use of the effective medications that are standard care for other patient groups because of potential concerns about causing fetal harm, they wrote. This could increase risk of morbidity, mortality, and irreversible disability accumulation for women with neurologic diseases.

Attempts to restrict the use of such medications even when prescribed by a physician have already been reported in states that have banned abortion. Methotrexate, a folate antagonist that can cause miscarriage at high doses and is the preferred treatment for ectopic pregnancy, is also one of the most used drugs for the treatment of inflammatory conditions such as rheumatoid arthritis, lupus, psoriasis and psoriatic arthritis, and Crohn's disease. It is sometimes used off label for the treatment of multiple sclerosis and as a less expensive, steroid-sparing agent for the treatment of myasthenia gravis.

But the cases that keep Dr. Nath up at night are those pertaining to children and teenage girls she has cared for with intellectual disabilities caused by neurodevelopmental conditions. These conditions may be due to a genetic disorder that affects brain development, brain injury earlier in life, or childhood seizure disorders that can affect cognition, she said.

It's well known that young women with intellectual disabilities are at higher risk for unplanned and unwanted pregnancy, Dr. Nath said. They are more likely to be targeted for sexual assault, they may be easier to manipulate because of their intellectual disability and find themselves in situations that they can't handle, and they are at high risk for becoming pregnant because they may not take birth control reliably or even be aware of their menstrual cycles.

They may not even realize they are pregnant, she added. The entire pregnancy and delivery process can be very traumatic for someone with an intellectual disability who may be functioning at a level much below their actual age, and young girls like this are a very high-risk population for pregnancy and delivery.

Women with a family history of neurogenetic disorders, ranging from neurofibromatosis to Fabry disease, Canavan disease, and Tay-Sachs disease are likely to be denied the option to make decisions about their pregnancy depending on the state they live in, said Janet F. Waters, MD, FAAN, clinical associate professor of neurology and division chief for women's neurology at the University of Pittsburgh Medical Center. Previously, these women could undergo testing during pregnancy and make a choice as to whether to continue if the child would be born with these significant and sometimes fatal neurologic diseases, but now they will not have the option.

Sonika Agarwal, MBBS, MD, previously practiced maternal fetal medicine in India and now specializes in fetal and neonatal neurology at the Children's Hospital of Philadelphia of the University of Pennsylvania.

Our role as pediatric neurologists should extend to women's health care before, during, and between pregnancies to maximize both the woman's health and the neonatal outcome which impacts pediatric health, Dr. Agarwal said. This ruling takes away both the patient's autonomy and the primacy of the physician-patient relationship. The only way we can render safe, effective, and evidence-based care in what are often profoundly challenging situations is to come together as a team of medical experts, critically evaluate all testinggenetics, imaging scans for the fetal brain and other systemsand any complications in the pregnant woman's health and go through the complex process of counseling a pregnant woman/couple about the likely prognosis and outcomes.

For example, she continued, in cases of anencephaly, we know the baby is not going to survive. There are other neurologic conditions where the baby may survive but would face significant challenges around birth and need lifelong support due to a severe and complex brain malformation or extensive brain destruction by stroke or brain bleed; we can reasonably say they will have a profoundly impaired neurological function or quality of life, or a reduced lifespan where they will live only for a few years sustaining on life support with feeding and breathing tubes. In these challenging fetal neurologic consultations, the clinicians and the parents together weigh all the information about the quality of life and possible outcomes for the unborn baby and the medical team supports them in the decision-making process. This critical relationship between patient and medical professionals is not something that should be intruded on by legislators.

Abortion bans also limit clinicians' options for managing women who develop life-threatening problems during pregnancy, said Mary Angela O'Neal, MD, FAAN, division chief of general neurology at Brigham and Women's Hospital in Boston and an expert in the neurology of pregnancy.

I've had patients diagnosed with brain cancer in pregnancy, and the treatment for mom is not something that's going to be good for the babysurgery, radiation, chemotherapy or all three. This is a very difficult choice for families to make, but it should be theirs. Or when a woman develops pre-eclampsia, that can cause stroke, hemorrhage, and death, and the only treatment is delivery. Will induction of labor in circumstances like these, such as in the late second trimester when the baby is unlikely to survive, be allowed under some of these state laws?

No one seems to know for sure, as many of these laws are vague and choices about enforcement are left up to local and state officials. In Ohio, for example, state law says that abortion is permitted only in a medical emergency requiring the immediate performance or inducement of an abortion to prevent death or irreversible bodily harm that delay in the performance or inducement of the abortion would create.

With such vague, open-to-interpretation language, how do clinicians decide just how immediate the medical emergency is? If states write laws that are completely vague about what the requirements are, they can still have abortion on the books, but have an environment in which no physician is willing to provide it, Melissa Murray, a law professor at New York University, told opinion writer Michelle Goldberg in a July 14 article in the New York Times.

Dr. Waters is haunted by the case of a woman who was brought to Magee-Womens Hospital at about 21 weeks of pregnancy in flagrant eclampsia like no case I have seen before. She had hidden her pregnancy from a strict family and sought no prenatal care; her pregnancy was diagnosed only after she came to the hospital with seizures and was given a routine pregnancy test prior to undergoing a head CT.

By the time she reached us, this woman was blind, she had so much brain edema that she was essentially comatose. We had to save the mom and save her fast, said Dr. Waters. We had to go through basically a delivery at 21 weeks, which would be considered an abortion under many of these laws. The baby was already gone, but what if it had still been alive? In a state with an abortion ban, what choice do you make? In any decision about delivery, the woman has to come first.

Although abortion remains legal and likely to be protected in 19 states, women in large swaths of the country will have to travel long distances to access an abortion, which poses a significant problem of equity.

Here in Kentucky, our trigger ban was enjoined by a court, but if it goes into place, leaving the state is not realistic for the average person, said Dr. Ebong. Kentucky is a very poor state, and the nearest states are West Virginia, Tennessee, and Ohio, which are in the same boat as Kentucky when it comes to their laws. Women can't just get a plane ticket to go further for an abortion, that's not a realistic option and it shouldn't have to be. You should have access close to where you are.

Individuals who have more resources are going to have more choices, agreed Dr. O'Neal. This will affect lower-income people more devastatingly because they're not going to have the financial and other resources to be able to make those choices. We know that people from marginalized communities have less opportunity to have neurologic care to plan and optimize their medications, so they are at even more risk. Their choices are being taken away from them as we speak, and I can't see this as doing anything but magnifying the already existing inequities.

These laws are directly in conflict with our code of ethics as neurologists and as physicians, which is to put our patient's best interest first, said Dr. Cejas. We won't be able to provide appropriate care. Regardless of what a person thinks about abortion from an ideological perspective, abortion is health care, and it is a medical procedure, and we have to offer our patients multiple options with respect to their care. But as more of these restrictions come into place, we'll see more and more neurologists put into positions where taking the best care of our patients from a medical and ethical perspective is in conflict with what we are allowed to do from a legal perspective. When I talk to colleagues in states with these bans already in place, they don't know what to do and what to tell their patients. And what will our hospitals do to protect us and our right to provide optimal care?

The AAN, Association of American Medical Colleges, the American Medical Association, the American Academy of Pediatrics, the American Psychiatric Association, the American Epilepsy Society, as well as the Child Neurology Foundation and Child Neurology Society, have all published statements in response to the Supreme Court decision, focusing on the primacy of the relationship between physicians and their patients in making health care decisions.

Dr. Nath urges neurologists to make their voices heard by becoming more involved in advocacy. When we have our voices heard in the rooms where they are writing legislation, that can have a very big impact, particularly within state legislatures, she said. This is one among many issues that shows us that we need to have a seat at the table. It's a wakeup call for us. It matters who's in these legislatures, and your professional and life experience matters.

In this issue, we cover the impact of the recent Supreme Court decision overturning Roe vs. Wade on the field of neurology. The editors of Neurology Today believe that abortion is health care, and health care decisions should be made between patients and their physicians. We fear for the impact on the health of women with neurologic disorders, who may find themselves in life-threatening situations due to this decision. We will continue to cover the impact of the Supreme Court decision on our patients and our practice.

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Abortion ruling prompts variety of reactions from states – ABC News

August 19th, 2022 2:06 am

The U.S. Supreme Court on June 24 overturned Roe v. Wade, the 1973 decision that had provided a constitutional right to abortion. The ruling was expected to lead to abortion bans in roughly half the states, although the timing of those laws taking effect varies.

Some Republican-led states banned or severely limited abortion immediately after the Dobbs v. Jackson decision, while other restrictions will take effect later.

In anticipation of the decision, several states led by Democrats took steps to protect abortion access. The decision also set up the potential for legal fights between the states over whether providers and those who help women obtain abortions can be sued or prosecuted.

Here is an overview of the impact the ruling has had so far in every state and the status of their laws.

ALABAMA

Political control: Alabamas Republican-controlled Legislature and Republican governor want to ban or restrict access to abortions.

Whats happened since Dobbs: Hours after the Dobbs ruling, a judge lifted an order that had blocked a 2019 law with one of the nations most stringent abortion bans from being enforced.

Whats in effect: The ban is now in effect. It makes it a felony to perform an abortion at any stage of pregnancy with no exceptions for rape or incest. There is an exception in cases where the womans health is at serious risk. The penalty is up to 99 years in prison.

Clinics offering abortions? No.

Whats next: Some Republican lawmakers have said they would like to see the state replace the 2019 ban with a slightly less stringent bill that would allow exceptions in cases of rape or incest. Proponents said the 2019 ban was deliberately strict in the hopes of sparking a court challenge to Roe.

ALASKA

Political control: Republicans hold a majority of seats in the Legislature, but the House has a bipartisan coalition majority composed largely of Democrats. Republican Gov. Mike Dunleavy, who believes life begins at conception, is seeking reelection. His main challengers independent former Gov. Bill Walker, and Democrat Les Gara have said they would protect abortion rights if elected.

Whats happened since Dobbs: The Legislature ended its regular session before the decision came out, and there has been no push for a special session.

Whats in effect: The state Supreme Court has interpreted the right to privacy in the state constitution as encompassing abortion rights.

Clinics offering abortions? Yes.

Whats next: Voters in the fall will be asked if they want to hold a constitutional convention, a question that comes up every 10 years. Many conservatives who want to overhaul how judges are selected and do away with the interpretation that the constitutions right to privacy clause allows for abortion rights see an opportunity in pushing for a convention.

ARIZONA

Political control: The GOP controls both chambers of the state Legislature. Republican Gov. Doug Ducey must leave office in January because of term limits.

Whats happened since Dobbs: Legal uncertainty about two different abortion laws prompted clinics to stop providing the procedure. Republican Attorney General Mark Brnovich has asked a judge to lift a decades-old order that blocks enforcement of an abortion ban passed before Arizona was a state. But a new law scheduled to take effect Sept. 24 would be less stringent, banning abortions after 15 weeks of pregnancy. Also after the Dobbs ruling, the U.S. Supreme Court began allowing the state to enforce a 2021 ban on abortions done solely because the fetus has a genetic abnormality such as Down syndrome. But a federal judge in Phoenix in July blocked enforcement of another part of that so-called personhood law that grants legal rights to fertilized eggs or fetuses. Abortion rights supporters said that could have been used to charge providers with assault, child abuse or other crimes for otherwise-legal abortions.

Whats in effect: The law before Dobbs barred abortions after about 22 weeks.

Clinics offering abortions? No.

Whats next: More court battles are expected over whether the earlier, more complete ban is in effect and whether Arizonas less stringent law can take effect in September.

ARKANSAS

Political control: The Legislature and governors office are controlled by Republicans. Gov. Asa Hutchinson is term-limited and will leave office in January. Republican nominee Sarah Sanders, press secretary to former President Donald Trump, is widely favored to succeed him in the November election.

Whats happened since Dobbs: A trigger ban on most abortions adopted in 2019 went into effect.

Whats in effect: Abortions are banned with the exception of when the procedure is needed to protect the life of the mother in a medical emergency.

Clinics offering abortions? No.

Whats next: Hutchinson favors exceptions in the case of pregnancies caused by rape or incest, but he does not expect to ask lawmakers to consider it at a special legislative session.

CALIFORNIA

Political control: Democrats who support access to abortion control all statewide elected offices and have large majorities in the Legislature.

Whats happened since Dobbs: The day of the Dobbs ruling, Gov. Gavin Newsome signed a bill intended to protect patients or providers from being sued in states that have abortion bans. He has also launched a commitment with Oregon and Washington to defend access to abortion.

Whats in effect: Abortion is legal in California until viability, generally considered to be around 24 weeks.

Clinics offering abortion? Yes.

Whats next: Lawmakers plan to put a constitutional amendment on the ballot in November that would explicitly guarantee the right to an abortion and contraceptives.

COLORADO

Political Control: Colorados Democratic-controlled Legislature adopted and its Democratic governor signed into law a fundamental right to abortions in April.

Whats happened since Dobbs: After the legislature introduced the bill codifying abortion rights, Colorado Governor Jared Polis signed an executive order saying Coloradans will not participate in out-of-state abortion-related investigations.

Whats in effect: Colorados Reproductive Health Equity Act declares fundamental rights to abortions at any stage of pregnancy. The law also prohibits local governments from denying, restricting, or depriving individuals of an abortion. State law still prohibits public funding for abortions and requires that minors inform their parents.

Clinics offering abortions? Yes.

Whats next: Republican lawmakers in Colorado have spoken about legislative challenges to the new state law. Colorado clinics are gearing up for an expected wave of out-of-state abortion seekers as surrounding states pass abortion bans.

CONNECTICUT

Political control: Democrats who control the Connecticut General Assembly support access to abortion, as does the states Democratic governor.

Whats happened since Dobbs: A law protecting abortion providers from other states bans took effect July 1. It created a legal cause of action for providers and others sued in another state, enabling them to recover certain legal costs. It also limits the governors discretion to extradite someone accused of performing an abortion, as well as participation by Connecticut courts and agencies in those lawsuits.

Whats in effect: Abortion is legal in Connecticut until viability, generally considered to be around 24 weeks. A law adopted in 2022 allows advanced practice registered nurses, nurse-midwives or physician assistants to perform aspiration abortions in the first 12 weeks of pregnancy.

Clinics offering abortions? Yes.

Whats next: Theres been discussion of amending the state constitution to enshrine the right to abortion, which could take many years.

DELAWARE

Political control: Democrats control the governors office and the General Assembly and have taken several steps to ensure access to abortion.

Whats happened since Dobbs: The state already had a 2017 law to codify the right to abortion and a 2022 law allowing physician assistants and advanced practiced registered nurses to prescribe abortion-inducing medications. After the ruling, the state adopted another law allowing physician assistants, certified nurse practitioners and nurse midwives to perform abortions before viability that includes legal protections for providers and patients.

Whats in effect: Abortion is legal until viability.

Clinics offering abortions? Yes.

Whats next: With protections in place, no major abortion policy changes are expected.

DISTRICT OF COLUMBIA

Political control: The local government in the nations capital is controlled by Democrats, with a Democratic mayor and the D.C. Council split between Democrats and nominal independent politicians, who are all, invariably, Democrats.

Whats happened since Dobbs: No policy changes have come about since the ruling.

Whats in effect: Abortion is legal at all stages of pregnancy.

Clinics offering abortions? Yes.

Whats next: The D.C. Council is considering legislation that would declare Washington, D.C., a sanctuary city for those coming from states where abortion is banned. But because Congress has oversight power over D.C. laws, a future ban or restrictions remain possible depending on control of Congress.

FLORIDA

Political control: Republicans control the House and Senate and governors office, with GOP Gov. Ron DeSantis pledging to expand pro-life protections after the Dobbs decision.

Whats happened since Dobbs: Floridas new 15-week abortion ban law went into effect July 1. The law is the subject of an ongoing lawsuit from abortion providers in Florida but remains in effect.

Whats in effect: The Florida law prohibits abortions after 15 weeks, with exceptions if the procedure is necessary to save the pregnant womans life, prevent serious injury or if the fetus has a fatal abnormality. It does not allow exceptions in cases where pregnancies were caused by rape, incest or human trafficking. Violators could face up to five years in prison. Physicians and other medical professionals could lose their licenses and face administrative fines of $10,000 for each violation.

Clinics offering abortions? Yes.

Whats next: The lawsuit against Floridas 15 week ban is ongoing and is expected to eventually reach the state Supreme Court. Republicans believe the conservative-controlled court will uphold the law.

GEORGIA

Political control: Georgia has a GOP-controlled General Assembly and a Republican governor who support abortion restrictions, but all are up for election this November.

Whats happened since Dobbs: A federal appeals court allowed the states 2019 abortion law to be enforced in a July 20 ruling after three years of being on hold.

Whats in effect: The law bans abortion when fetal cardiac activity can be detected and also declares a fetus a person for purposes including income tax deductions and child support. There are exceptions in cases of rape if a police report is filed and incest. There are exceptions if a womans life or health would be threatened.

Clinics offering abortions? No.

Whats next: Some Republican lawmakers and candidates want Georgia to go further and ban abortion entirely, but Gov. Brian Kemp is unlikely to call a special session before Novembers general election. Lawmakers are likely to consider further action when they return for their annual session in January. A major factor is whether Kemp is reelected or unseated by Democrat Stacey Abrams in Novembers election.

HAWAII

Political control: Hawaiis governor is a Democrat and Democrats control more than 90% of the seats in the state House and Senate.

Whats happened since Dobbs: The law hasnt changed.

Whats in effect: Hawaii legalized abortion in 1970, three years before Roe v. Wade. The state allows abortion until a fetus would be viable outside the womb. After that, its legal if a patients life or health is in danger.

Clinics offering abortions? Yes.

Whats next: Democratic lawmakers are considering how they might protect Hawaii medical workers from prosecution or civil litigation from other states for treating residents who arent full-time Hawaii residents such as military dependents or college students. Policymakers are paying attention to how the state may increase access to abortion on more rural islands where there is a doctor shortage, for example by boosting training for some nurses who under a new law passed last year are allowed to perform first-trimester abortions.

IDAHO

Political control: Republicans hold supermajorities in the House and Senate and oppose access to abortion, as does the states Republican governor.

Whats happened since Dobbs: The ruling triggered a ban on all abortions except in cases of reported rape or incest or to protect the mothers life. It is to take effect Aug. 25. President Joe Biden's administration has sued over the measure, arguing that it conflicts with a federal law requiring doctors to provide pregnant women with medically necessary treatment.

Whats in effect: Current law allows abortions up to viability, around 24 weeks, with exceptions to protect the womans life or in case of nonviable fetuses.

Clinics offering abortions? Yes.

Whats next: The Idaho Supreme Court is expected to rule in August on whether to lift an injunction that blocked enforcement of a law that could subject medical providers who perform abortions to lawsuits and criminal charges.

ILLINOIS

Political control: Illinois is overwhelmingly Democratic with laws providing greater access to abortion than most states. Democrats hold veto-proof supermajorities in the House and Senate, and the Democratic first-term governor seeking reelection this year, J.B. Pritzker, has promoted peaceful protests to protect the right to an abortion.

Whats happened since Dobbs: No major policy changes. Pritzker has called for a special legislative session to expand abortion rights.

Whats in effect: Abortion is legal in Illinois to the point of viability, and later to protect the patients life or health.

Clinics offering abortions? Yes.

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Is pregnancy possible after multiple failed IVF attempts? Can your frozen eggs and sperm be as healthy later? – The Indian Express

August 19th, 2022 2:06 am

1) After repeated attempts, which are also cost-consuming, many couples opt out of in-vitro fertilisation (IVF) treatments, losing their hope for pregnancy. Can pregnancy be successful after multiple failed IVF attempts?

An IVF cycle can fail because of a few reasons Improper diagnosis of the cause of infertility, improper treatment, chromosomal abnormalities in embryo and failure of implantation/endometrial receptivity. One of the first things that IVF requires is that both the male and female partners go through a few tests, including blood tests and ultrasound, to determine the root cause of infertility. It is only after a thorough investigation of each unique patient case that a treatment can be charted out. In many cases, the couple is required to take up medication to treat underlying health conditions or even other procedures such as removal of uterine fibroids.

Once fertilisation of the egg and sperm takes place and an embryo is formed, pre-implantation genetic testing (or PGT) is performed to check for any genetic anomalies in the embryo; these anomalies can act as a barrier to conception or lead to miscarriage. Thus, PGT helps in two waysa) transfer of the best graded embryo into the uterus, and b) single embryo transfer (multiple embryo transfers can be done in some cases to increase the probability of pregnancy but can lead to complications later). The technology used including minute details such as the temperature and humidity at which gametes are handled can also make a significant difference to the success of an IVF cycle. In most cases, the gap is bridged by understanding the history of the patient, taking a unique approach to the case and choosing the right technology.

2) You had a patient who got pregnant after the 14th attempt. Can you share details?

After repeated cycles of failed in-vitro fertilisation (IVF), Nashik couple Vibha and Abhik (names changed) were successful with a twin pregnancy on their 15th attempt. Married for 15 years, the couple exhibited secondary infertility since they already had an elder child. Hoping to complete their family with more children, they tried to conceive naturally as well as using assisted reproductive technology (ART). Then they opted for IVF.

Vibha (36) reported having chronic hypertension and hypothyroidism. Upon testing for fertility parameters, it was found that the uterine lining, endometrium, had grown into the uterus (called adenomyosis). Additionally, the left fallopian tube was blocked with fluids (left terminal hydrosalpinx) and had less number of viable eggs (poor antral follicular count). On analysing Abhiks semen sample, it was found that he had severe oligoasthenoteratozoospermia or OAT. This condition is marked by three characteristic defects in sperm low sperm count, poor sperm movement and abnormal shape.

The couple had attempted ART 12 times with their own eggs, all of which failed. Given the couples compromised levels of healthy egg reserve and sperm, the best alternative was to opt for donor embryos. Donor embryos are genetically and physically healthy and have better chances of implanting in the uterus, and subsequently leading to a live birth.

In order to prepare Vibhas uterus for implantation, she was given platelet-rich plasma (PRP) 10 days before embryo transfer. Laser assisted hatching also helped to prepare her womb. Two donor embryos were transferred. Levels of human chorionic gonadotropin (hCG) and an ultrasound confirmed the presence of two growing foetuses. But they didnt last full term. This is called recurrent implantation failure. This is a complex problem that occurs due to a number of reasons. The treatment plan varies, depending on the source of the problem. In such cases, the best solution that provides light at the end of the tunnel is personalised treatment, depending on the unique nature of each case.

3) What is the success rate of IVF per cycle according to the age of the couples?

Age has a variety of effects on fertility in general and the efficacy of IVF. According to the Centres for Disease Control and Prevention (CDC), the average percentages of ART cycles that lead to a live birth are: 31 per cent in women younger than 35 years of age 24 per cent in women aged 35 to 37 16 per cent in women aged 38 to 40 8 per cent in women aged 41 to 44 3 per cent in women age 43 and older

These success rates have historically been associated with the biological clock of women and their limited reproductive window. However, new studies on the relation of age and male infertility have found that men, too, have a similar limitation. Men above the age of 40 have been found to have deteriorated sperm quality and reduced fertility.

4) It has been observed that even young couples in the age group of 25 and 35 face infertility and are now opting for IVF treatment. What are the reasons behind early infertility?

Young couples in their mid-20s and 30s are increasingly having difficulty conceiving. This can be attributed to the emergence of lifestyle-related diseases such as diabetes, obesity, hypertension, and thyroid disease. Other lifestyle triggers are work-related stress at work, poor eating habits, increase in consumption of alcohol and tobacco and lack of regular exercise. The pandemic-induced lockdowns and work-from-home formats have meant long sedentary hours, which have upset the hormone patterns of young people. Medical conditions such as endometriosis, endometrial tuberculosis and polycystic ovarian syndrome (PCOS) are also to blame.

It is, however, imperative to mention that there is an increased awareness about infertility. The easy access to information on IVF and an openness to accept a medical solution to infertility have played a significant part in changing mindsets. This is also applicable for people who are born with genetic diseases or congenital limitations.

5) What kind of fertility issues are most common among younger couples nowadays?

There has been a spike in cases among couples experiencing infertility wherein women have been diagnosed with polycystic ovarian syndrome (PCOS) and men with azoospermia. It has also been noted that in many young men experiencing infertility, exposure of the pelvic area to continuous heat (such as laptops or engines) has been a contributor. It is known that the testes need to be a few degrees cooler than the rest of the body. This exposure to heat sources impacts sperm production.

Moreover, with six per cent of the adult Indian population living with one or more sexually transmitted diseases (STDs) that can impact reproductive organs and function, it is essential that those with multiple sexual partners get regular STD tests done so that they can be treated early enough. In women, other fertility health issues can include endometriosis, pelvic inflammatory disease and uterine fibroids. In men, other fertility challenges can include erectile dysfunction, retrograde ejaculation and varicoceles.

6. Considering the changing lifestyle of todays young generation, what suggestions do you have for those who want to marry late?

You must get married or begin a family only when you feel prepared to do so. For young people, especially in urban centres, it has become increasingly common for both partners to become financially independent first before committing to a family. Those who envision having a family in the future can plan their fertility journey ahead in time.

With the help of cryopreservation techniques, they can freeze their eggs and sperm in their 20s to early 30s and use them up to 10 years later when they are ready to get married and/or to start a family. Even for young couples, who are married but would want to focus on their careers or explore the world before bringing in a new life, embryo freezing is a technique that can help them conceive later. This ensures that eggs, sperms and embryos are harvested at a time when they are genetically and morphologically robust.

Additionally, young individuals must also take care of their health to avoid complications. The simple things that one can do is to incorporate a balanced diet, be physically active, maintain a healthy weight, avoid consumption of alcohol and tobacco, take proactive measures to combat stress and anxiety and go for regular health check-ups.

7. Is there a right age for IVF?

Even with technology, age continues to be a major determinant of pregnancy outcomes. Women in their 20s and early 30s, who use IVF, have more chances with pregnancies and single live births. However, after reaching the mid-30s, the success rates begin to drop slowly. Ageing eggs are unable to fertilise with a sperm or have genetic anomalies, reducing chances of a full-term baby. At the age of 30, women have about 12 per cent of the 300,000 eggs that they are born with. By the age of 40, only 9,000 of them remain. As soon as women reach the age of menopause (50-55), there are very less eggs remaining in the ovary and their viability is questionable. Patients are recommended to seek eggs from younger egg donors once they reach the age of 43.

As per the Assisted Reproductive Technology (Regulation) Act, 2021, men and women need to be between the legal age of marriage and 55 respectively to seek treatment. This is essential as conceiving at an older age may also lead to several other complications for both the mother and baby.

Regardless of seeking the entire process of IVF, young couples as well as single men and women have the choice to freeze their sperms and eggs, respectively. This ensures that these gametes are collected early on in their lives and can be utilised when they are ready to have children in the future.

(Why this doctor? Dr Kshitiz Murdia has a fellowship in infertility from Singapore. He has experience of performing more than 15,000 IVF cases)

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Is pregnancy possible after multiple failed IVF attempts? Can your frozen eggs and sperm be as healthy later? - The Indian Express

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Meet the Expert: Focus on orthopaedics and VTE – Hospital Healthcare Europe

August 19th, 2022 2:06 am

Hospital Healthcare Europe had the pleasure of speaking with Professor of Orthopaedic Surgery, Javad Parvizi MD FRCS, who shared his thoughts on recently published international consensus meeting recommendations on venous thromboembolism and how they could impact clinical care

Please tell us about your background and institution?

Dr Parvizi originally trained for four years to be cardiovascular surgeon before moving to the US to undertake research on blood flow based in an orthopaedics laboratory. He later took up a residency in orthopaedics at the Mayo Clinic before finally moving to Philadelphia, where he has been since 2003. The Rothman Institute is part of Thomas Jefferson University and one of the largest orthopaedic practices in the world, employing over 300 physicians and surgeons. According to Dr Parvizi, this busy department performs approximately 20,000 joint replacements every year.

What exactly is a DVT and how common is it?

As Dr Parvizi explained, a DVT is a deep vein thrombosis and is a clotting problem that occurs in peoples veins and blocks the vein. He added that sometimes a clot in the lungs can stop people from breathing, leading to a fatal outcome. As he continued, both a DVT and pulmonary embolism or collectively, a venous thromboembolism (VTE), are potentially life-threatening conditions if not treated or prevented.

Dr Parvizi discussed how most VTEs happen after surgical procedures but a VTE can be an unprovoked occurrence, for instance, through air travel, sitting for a long period of time or even out of the blue. Although there is always a risk of developing a DVT after a surgical procedure, Dr Parvizi added that current thinking suggested that some patients have a genetic predisposition to develop a VTE.

How high is the risk of developing a VTE among surgical patients?

According to Dr Parvizi, the risk of developing a VTE after an orthopaedic procedure (even when accounting for other risk factors) is variable. There are two types of VTE: one below the knee (a distal DVT); and a proximal DVT, which occurs above the knee, and which is associated with a greater risk to a patient. Dr Parvizi felt that distal DVTs are common, suggesting that these can occur in 10% 15% of cases after a joint replacement but, fortunately, as he explained, these are all self-limiting, non-significant events. In fact, Dr Parvizi noted how in many cases, both clinicians and patients would be unaware that a DVT occurred and that distal DVTs invariably resolve over time. Nevertheless, the development of a pulmonary embolism (PE) is a much more serious complication, but thankfully the rate at which these develop is much lower. Dr Parvizi estimated that a PE might occur at a rate of perhaps 0.5% or even lower, although the rate of a fatal PE is even lower, perhaps 1 in 1000, although the literature suggests that the actual incidence might be lower still, at 1 in 4000.

What is the patient burden of a VTE?

In most cases where a patient develops a distal DVT after surgery, Dr Parvizi described this as a benign event that commonly resolves without any lasting problems. In contrast, a chronic VTE is more problematic and could lead to postphlebitic syndrome, where there is a blockage of the veins in the legs. As he explained, postphlebitic syndrome can result in chronic swelling, and chronic ulcerations for a patient. However, he ventured that perhaps the most important reason to assess whether a patient had a DVT was to prevent the formation of a PE. Although there is a widely held belief in the mechanical propagation theory, i.e., where a DVT literally travels from distal veins to the pulmonary circulation, Dr Parvizi said that recent work has questioned this theory and that now we think that a DVT doesnt really travel to the lungs but that a PE and DVT can develop at the same time, in a patient who is in a hypercoagulable state.

What about the healthcare and economic burden of chronic DVT?

Dr Parvizi explained how the economic impact of a chronic DVT is significant, as patients require long-term treatment, which might include hospitalisation as well as chronic use of anticoagulants. As he explained, a DVT is more likely to become chronic if a patient develops several DVTs during their procedure or when they become unresponsive to anticoagulation, and this latter effect can arise if an individual has an underlying problem with the anatomy of the veins.

Why do you think that the new guidelines were necessary?

Dr Parvizi explained how surgery induces a hypercoagulable state and which, in turn, increases the risk for the development of VTE. In the past after joint replacement, patients usually stayed in bed for a prolonged period of time. As a result, he added during the 1970s and 80s, the rates of DVT and PE were very high. In recent years, with a shift towards outpatient surgery and implementation of rapid recovery protocols, the overall incidence of VTE has declined drastically. Nevertheless, one practice from the past that has continued is the post-operative use of aggressive anticoagulation and Dr Parvizi discussed how in recent years, given the change in surgical practice and advice to avoid prolonged bed rest, the value of such aggressive anticoagulation has been called into question. A further consideration which might reduce the need for anticoagulation is greater use of intermittent compression devices. According to Dr Parvizi, due to a major shift in the delivery of care, there is now less requirement for aggressive anticoagulation. However, an important driver for change is the attendant risk associated with the use of anticoagulants, which lead to bleeding, increasing the risk for a haematoma, gross bleeding into the surgical wound or even in other organs such as the brain. Additionally, anticoagulants are both expensive and can be inconvenient to the patient, given the need for healthcare professionals to administer and/or monitor the anticoagulation drugs. Furthermore, anticoagulants are not benign drugs, and their use is associated with several other problems that include the need for re-hospitalisation, re-operation, infection and joint stiffness. In fact, Dr Parvizi noted how there have been studies showing that aggressive anticoagulation can kill patients, just like fatal PE.

Dr Parvizi acknowledged that while there are current guidelines available to help surgeons, these are subject to several limitations. For instance, most relate to hip and knee replacement and do not specifically cover other orthopedic procedures such as spine, foot and ankle, and sports surgery.In addition, Dr Parvizi mentioned how the current guidelines are totally disparate and conflicting in nature, with some recommending either for or against aggressive anticoagulation. A further limitation was that the current guidelines do not take into account the genetic or geographic predisposition for formation of VTE. As Dr Parvizi explained, For example, Asian patients are at a much lower risk of developing VTE than Caucasians. A final constraint of the currently available guidelines is that these were outdated, relating to surgical protocols that are not in effect any more, or limited themselves to reviewing literature that was mostly conducted by industry, which of course introduces some degree of bias.

Given all of the limitations, the International Consensus Meeting (ICM) gathered over 500 experts and specialists from across the world to produce updated and global guidelines using a strict and well defined process. The guideline committee reviewed the current literature, formulated relevant questions for current practice and sought consensus on these questions. Ultimately, the finished product was designed to be a global guideline for the prevention of VTE after all orthopaedic procedures.

A further advantage of the new guideline was the inclusion of physicians from other medical disciplines, such as cardiology, haematology, anaesthesia, vascular medicine and others, which enhanced the value of the guidelines and made them more applicable.

What would you say are the overarching principles and key recommendations of the guideline?

Dr Parvizi felt that the overarching principle of the guideline was the prevention and management of VTE for all orthopaedic procedures. He explained how the guideline was divided up into ten parts, one of which was a general section, with each of the subsequent sections being related to the different sub-specialities, e.g., foot and ankle, spine, etc.

The general recommendations were designed to answer questions relevant to all patients who underwent an orthopaedic surgical procedure. A total of 200 questions/issues were covered that included questions such as, are there genetic predispositions that cause VTE? or does prolonged bed rest increase the incidence of VTE? with the answer being yes to both questions.

Dr Parvizi felt that the most important recommendations were the following. Administration of aggressive anticoagulation is not necessary for the majority of patients undergoing orthopaedic procedures. He added that there is now plenty of evidence to show that intermittent compression devices work very well to prevent VTE but also that they provide additional benefits such as a reduction in post-surgical swelling of extremities, offer a better range of motion for the knee, and are associated with better patient satisfaction compared with the use of aggressive anticoagulation.

One overarching conclusion of the guideline, stemming from the available literature, is that low-dose aspirin is cost-effective and a safe modality for prevention of VTE. Studies have shown tha the use of aspirin also reduces post-operative fever, which is a common event that worries the patients and healthcare professionals. Moreover, Dr Parvizi mentioned that the use of aspirin has also been to reduce the rate of extra bone formation in the soft tissues (heterotopic ossification) and stiffness after orthopaedic procedures. He explained how the guideline recommended that aspirin should preferably be given twice a day for a period of four weeks but even two weeks of aspirin appears to be enough for most of these patients.

Overall, Dr Parvizi thinks that the new guidelines will allow clinicians to move away from the use of aggressive anticoagulants and to make greater use of intermittent compression devices and aspirin. In fact, he believes that the use of aggressive anticoagulants should now be reserved for those patients with a genetic predisposition and/or patients an extremely high risk for a VTE.

How will these guidelines impact clinical practice?

Dr Parvizi mentioned how in the US there has been a general shift over the last few years away from the use of aggressive anticoagulation towards the use of aspirin and intermittent compression devices. In fact, he quoted data from a survey of over 3000 joint surgeons showing that over 90% of surgeons now use compression devices and/or aspirin for prevention of VTE after joint replacement. While there has been an important change in practice among US surgeons, he thought that adoption of aspirin and intermittent compression devices by surgeons from other parts of the world has been slow mostly due to medico-legal concerns. A further barrier to adoption of aspirin and intermittent compression devices has been the resistance of colleagues from other specialties, such as haematology and cardiology, who might not be aware of the wealth of orthopaedic literature endorsing the use of aspirin.

He hopes that the publication of the new guidelines will provide the necessary endorsement and reassurance to the medical community to embrace a change in practice.

Are there any remaining uncertainties that might be addressed in the future?

Dr Parvizi felt that one of the benefits of developing a new guideline was that while providing robust evidence to support a change in orthopaedic practice, it also highlighted gaps in the current evidence and enabled the formulation of relevant questions that should be addressed by future research. He believes that there is a need for independent studies to compare the efficacy of low-dose aspirin with other anticoagulation agents. He mentioned one current, ongoing study (PEPPER trial) that is comparing low-dose aspirin, coumadin and factor 10 inhibitors for VTE prevention, the results of which are eagerly awaited. He noted how more studies are required to better understand the genetic mutations that predispose individuals towards having a VTE as well as more work on the role of intermittent compression devices.

Taken together, Dr Parvizi hoped that future studies will facilitate a move away from the use of expensive anticoagulants which ultimately have a huge economic impact. For example, he described how in the US alone there are over one million joint replacement procedures undertaken per year so if 92% of those patients are receiving aspirin, the anticipated cost savings would run into hundreds of millions.

Furthermore, there are a whole range of additional benefits to using aspirin including a reduction in the development of haematomas, infection risk, post-operative fever and subsequent clinical, fever work-up, less need for transfusions and a lower level of post-operative anaemia. He added that the available data suggest that aspirin is actually better than coumadin for the prevention of VTE. Ultimately, he suggested that convenience, efficacy, safety and economic benefits of aspirin are just beyond dispute now and that, over time, there will be a shift towards the use of aspirin and intermittent compression devices instead of expensive anticoagulant medications.

As for the next steps, Dr Parvizi says that the combination of the publication of the guideline in a prestigious orthopaedic journal (Journal of Bone and Joint Surgery) and future translations of the documents into numerous languages will allow effective dissemination of the work that was generated by over 500 experts. The guidelines are being discussed at various conferences and have been endorsed by a number of professional organisations, publishing the guideline on their websites. Finally, Dr Parvizi believes that it is necessary that patients who require orthopaedic procedures should no longer fear the development of a blood clot and become better informed that the changes in surgical procedures and VTE management in recent years are designed to be safer and more convenient for them.

Recommendations from the ICM-VTE: General. The ICM-VTE General Delegates. J Bone Joint Surg 2022;104(suppl 1):4162.

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Stress can throw off circadian rhythms and lead to weight gain – Medical News Today

August 19th, 2022 2:05 am

Scientists at Weill Cornell Medicine in New York say that stress-induced circadian clock disruptions may influence weight gain.

A study published in June showed that mice with artificially increased stress levels and interrupted hormone releases experienced an increase in fat cell growth. Its results appear in Cell Reports.

The second study, published in August, found that fat cell precursors commit to becoming fat cells only within a few hours at night. This work appears in the Proceedings of the National Academies of Sciences (PNAS).

Mary Teruel, PhD, associate professor of biochemistry at Weill Cornell Medicine, was the senior author of both studies.

A lot of forces are working against a healthy metabolism when we are out of circadian rhythm, Dr. Teruel said in a press release. The more we understand, the more likely we will be able to do something about it.

In the Cell Reports study, Dr. Teruel and her team implanted pellets with glucocorticoids, a type of stress-related hormone, in mice. This was to mimic the effects of chronic stress or Cushings disease.

Cushings disease triggers elevated levels of cortisol, the bodys stress hormone.

The pellets released glucocorticoids under the skin of the mice at a steady rate over three weeks. The researchers also observed control mice with typical daily stress hormone fluctuations.

Although all the mice ate the same healthy diet, the mice with pellets ended up weighing over 9% more than the control mice.

The researchers observed whether the weight gain was from fat expansion and found that the brown and white fat of the pellet mice had more than doubled. Their insulin levels spiked as well.

To the teams surprise, the metabolic disturbances kept blood glucose levels low. Further, the disruptions prevented fat from accumulating in the blood or liver.

When the researchers removed the pellets, these changes reversed immediately.

Dr. Teruel explained to MNT: We saw this in our paper, basically, once we stopped flattening the corticoids, [the mice] started reversing [the fat mass gain] and the hyperinsulinemia went away so that increased insulin that seems to be causing the fat mass gains that went away when the restored rhythm.

She added that this study indicates that chronic stress can make weight gain more likely, even with a healthy, low fat diet.

If you stress the animals at the wrong time, it has a dramatic effect. The mice arent eating differently, but a big shift in metabolism causes weight gain, Dr. Teruel said in the release.

Dr. Teruels research team hopes that their findings lead to developing drugs that could help reset circadian rhythms to help people with obesity.

We dont know enough [yet], but one would think cortisol receptor antagonists or [] things that restore the cortisol rhythms would probably help a lot.

Dr. Mary Teruel

Experts understand that flaws in circadian clock genes can alter cell differentiation in fat, immune, skin, and muscle cells.

The PNAS study revealed that even though differentiation happens over a few days, differentiation commitment happens within only a few hours. The findings also show that daily bursts of cell differentiation seem to be limited to evening phases when people are normally resting.

The decision to become a fat cell happens rapidly over 4 hours. It is like a switch, Dr. Teruel said.

Medical News Today discussed this with Dr. Mir Ali, bariatric surgeon and medical director of MemorialCare Surgical Weight Loss Center at Orange Coast Medical Center in Fountain Valley, California.

Dr. Ali explained how fat cells come to be: Fat cells form from [an] adipocyte progenitor cell or a type of cell that has not differentiated into its final form. The form it takes [to become] a fat cell depends on the hormonal and chemical stimulation it receives.

In the study, Dr. Teruel and her partners used fluorescent markers to observe daily fluctuations of fat cell production.

The researchers attached a red fluorescent protein to a protein that regulates circadian clock genes. They also attached a yellow fluorescent protein to peroxisome proliferator-activated receptor gamma (PPARG), a protein that controls fat cell production.

They discovered that during the rest period of the day, a certain circadian protein CCAAT enhancer binding protein alpha induces a rapid increase in the protein that regulates fat cell production.

The researchers also found that when PPARG levels hit a certain threshold, individual fat precursor cells irreversibly commit to differentiate within only a few hours, which is much faster than the rest phase and the overall multiday differentiation process.

Dr. Teruel and her team believe that working with this time window may open therapeutic strategies to use timed treatment relative to the [circadian] clock to promote tissue regeneration.

Dr. Ali said: These studies are interesting in that they show the timing and length of stimulation affect the formation and growth of fat cells. The implications of this are that if we can find a way to safely influence the cell to grow or not grow, it may affect obesity in humans.

However, he believed that more extensive research is needed to make the studies findings applicable to humans.

Dr. Teruel told MNT that she and her co-authors were just trying to work on basic mechanisms [] Right now, we need to show this is really a mechanism that happens []

The researchers do plan to replicate the studies with people. We are looking at protein ribbons and humans using saliva samples, Dr. Teruel shared with MNT. Were planning to do those kinds of experiments.

Their main objective, she said, is to figure out ways to restore circadian [rhythms].

Dr. Teruel mentioned that currently known strategies, such as meditation and regular sleep in the dark may help.

She expressed hope that there could be some pharmacological ways [to] fix this in the future as well.

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Scientists Aim to Bring the Tasmanian Tiger Back From Extinction Mother Jones – Mother Jones

August 19th, 2022 2:05 am

This story was originally published by the Guardianandis reproduced here as part of theClimate Deskcollaboration. The colorized thylacine footage was created by Australias National Film and Sound Archive

Scientists in Australia and the US have launched an ambitious multimillion-dollar project to bring back the thylacine, a marsupial that died out in the 1930s, and reintroduce it to its nativeTasmania.

The thylacine, also known as the Tasmanian tiger, is the second undertaking by Colossal, a Texas-based biotechnology de-extinction company that last year announced it planned to use genetic engineering techniques tore-create the woolly mammoth and return it to the Arctic tundra.

Its new project is a partnership with the University of Melbourne, which earlier this yearreceived a $5m philanthropic giftto open a thylacine genetic restoration lab. The labs team has previouslysequenced the genome of a juvenile specimenheld by Museums Victoria, providing what its leader, Prof Andrew Pask, called a complete blueprint on how to essentially build a thylacine.

The thylacine was Australias only marsupial apex predator. It once lived across the continent, but was restricted to Tasmania about 3,000 years ago. Dog-like in appearance and with stripes across its back, it was extensively hunted after European colonization. The last known survivor died in captivity in 1936. Despite hundreds of reported sightings in the decades that followed, andsome quixotic attempts to prove its ongoing existence, it was officially declared extinct in the 1980s.

The scientists aim to reverse this by taking stem cells from a living species with similar DNA, thefat-tailed dunnart, and turning them into thylacine cellsor the closest approximation possibleusing gene editing expertise developed by George Church, a professor of genetics at Harvard Medical School and Colossals co-founder. New marsupial-specific assisted reproductive technologies will be needed to use the stem cells to make an embryo, which would be transferred into either an artificial womb or a dunnart surrogate to gestate.

Pask said the partnership was the most significant contribution ever made to marsupial conservation in Australia as more than 30 scientists worked to accelerate the massive grand challenge of bringing the thylacine back from the dead. He believed the first joeys could be born in 10 years.

Colossals chief executive and other co-founder, the tech and software entrepreneur Ben Lamm, was more bullish, believing it was possible in less than six years, the timeframe that the company had set itself to produce the first set of mammoth calves. I think its highly probable this could be the first animal we de-extinct, Lamm told the Guardian.

The challenges faced by the project are significant, and the scientists acknowledge several breakthrough steps will have to land for it to succeed. On reproductive technology, Pask said: We are pursuing growing marsupials from conception to birth in a test-tube without a surrogate, which is conceivable given infant marsupials short gestation period and their small size.

If successful, the plan would be to introduce the animal in a controlled setting on Tasmanian private land with an eventual goal of returning it to the wild. The researchers said returning an apex predator could help rebalance the states ecosystem. But Pask said they also hoped that their work could have a wider impact in helping to addressan extinction crisis.

He said the world was changing too rapidly for existing conservation techniques to save many threatened species, pointing to the catastrophic impact on Australian wildlife from bushfires. We have to look at other technologies and novel ways to do that if we want to stop this biodiversity loss, he said. We have no choice. I mean, it will lead to our own extinction if we lose 50 percent of biodiversity on Earth in the next 50 to 100 years.

He said the team hoped to address concerns about the genetic health of the speciesan issue with the now extinct populationby sequencing the genomes of between 80 and 100 individuals, and that dealing with genetic diversity was relatively straightforward compared with other challenges the research faced.

The announcement has received a mixed response from conservation biologists. Corey Bradshaw, a professor in global ecology at Flinders University, believed it was unlikely to be successful. Even if you can do it [in the lab]and I have my doubts about thathow do you create the thousands of individuals of sufficient genetic variation you need to create a healthy population?

Euan Ritchie, a professor in wildlife ecology and conservation at Deakin University, said other outstanding questions included whether the project could do more to help threatened species than existing conservation genetics. He said turning a lab-created animal into a wild population would be an enormous challenge, but the financial support for de-extinction research should not be seen as a zero sum game.

Obviously we want to, as much as possible, save the current species we have, but if someone wants to fund bringing back the thylacine and they dont want to fund something else, then why not? If we do learn more about genetics that can be used to protect existing species, then all the better.

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Benefits Of Ozone Therapy In Pain Medicine – Nation World News

August 19th, 2022 2:05 am

Ozone therapy is considered to be one of the most effective treatments to relieve pain, joints and contractures. Dr. Mariella Alvarenga, an expert in Aesthetic and Orthomolecular Medicine, shares her experience and the benefits of this technique.

It is the administration of medical ozone into the body for the treatment of various diseases. Through a set of techniques, ozone is used as a therapeutic agent in a large number of pathologies, such as osteoarthritis and arthritis, primarily inflammation. It consists of injections into pain points, that is, they are of direct action in local application.

What type of deformity is it recommended for?

It is used not only in medicine but also in beauty treatments. In beauty I can treat acne, cellulite, flaccidity, localized fat. When what is the drug, it improves circulation in general, it is indicated for hypertension, diabetics; in those chronic diseases which are degenerative and have impaired circulationDr. Alvarenga said.

On the other hand, ozone also works to improve the immune system as it stimulates the production of stem cells and the treatment consists of removing blood that will be ozonated and then reapplied intramuscularly. This treatment is called ozonized autovaccine or auto hemotherapy.

Also, it has another advantage that is important to me, which is the issue of price. Orthomolecular formulas became quite expensive, this is a fact. So, this gives me an opportunity to improve the package because it is a complete combination deserves, he said.

Those who want to know more about this serum therapy and improve their quality of life can contact her on Instagram or Facebook as @dramarielaalvarenga or call on 3764 527871.

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Ashton Kutcher battled vasculitis causing blindness, loss of hearing. Know all about the rare condition – India TV News

August 11th, 2022 1:59 am

Ashton Kutcher has opened up about being diagnosed with a "rare form of vasculitis", an autoimmune disease that left him unable to see, hear, or walk. The Two And A Half Men actor shared the diagnosis in the Monday episode of the National Geographic show, Running Wild with Bear Grylls: The Challenge. "Like two years ago, I had this weird, super rare form of vasculitis, that like knocked out my vision, it knocked out my hearing, it knocked out like all my equilibrium," Kutcher said in a clip shared by entertainment programme Access Hollywood.

In the video, the 44-year-old further said it took him a year to build his life from scratch and that he was "lucky to be alive". After the clip went viral on social media, Kutcher posted a clarification on Twitter, saying the health scare happened three years ago following which he had made a full recovery.

Let's find out whatvasculitis is that affected Kutcher severely.

Vasculitis is inflammation of a blood vessel or blood vessels.The inflammation can cause the walls of the blood vessels to thicken, which reduces the width of the passageway through the vessel. If blood flow is restricted, it can result in organ and tissue damage.Vasculitis may affect anyone regardless of age or other factors. It may be treated with medication that controls the inflammation and prevents flare-ups.

Kutcher revealed that due to hisVasculitis, he was unable to 'see, hear, or walk'.This is a possible complication of untreated giant cell arteritis, whichcan cause double vision and temporary or permanent blindness in one or both eyes. Some types of vasculitis can cause numbness or weakness in a hand or foot. The palms of the hands and soles of the feet might swell or harden.Dizziness, ringing in the ears and abrupt hearing loss may also occur, as per Mayo Clinic.

Read:Can Monkeypox spread through sex? Experts answer who are at high risk for transmission

General symptoms of vasculitis include: fever, headache, fatigue, weight loss, general aches and pains. Other signs and symptoms are related to the parts of the body affected. Vasculitis may turn severe and requires treatment and expert care. So if any of the mentioned symptoms show up or persist, seeing a doctor is recommended. Mostly, vasculitis can be treated with medication and proper medical oversight.

Read:Can stress be good for brain functioning? Here's what the researchers have to say

(With PTI inputs)

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Prevent Blindness Is Recognized as a Healthy People 2030 Champion for Supporting the Initiative’s Vision – Vision Monday

August 11th, 2022 1:59 am

VM - Prevent Blindness Is Recognized as a Healthy People 2030 Champion for Supporting the Initiatives Vision PEOPLE: Honors By Staff Friday, August 5, 2022 12:24 AM CHICAGOPrevent Blindness, the nations leading voluntary eye health and safety nonprofit organization, has been recognized by the Office of Disease Prevention and Health Promotion (ODPHP) within the U.S. Department of Health and Human Services (HHS) as a Healthy People 2030 Champion. As a Healthy People 2030 Champion, Prevent Blindness has demonstrated a commitment to helping achieve the Healthy People 2030 vision of a society in which all people can achieve their full potential for health and well-being across the lifespan.ODPHP recognizes Prevent Blindness, along with other Healthy People 2030 Champions, as part of a growing network of organizations partnering with ODPHP to improve health and well-being at the local, state and tribal level.Prevent Blindness has been a collaborator with the Healthy People Initiative for several decades. Objectives for the Healthy People 2030 program align with the Prevent Blindness sight-saving mission in a variety of areas, including childrens vision, diabetes, falls prevention, eye safety, access to care for underserved populations and more.At Prevent Blindness, we are excited that vision and eye health are included as key components in the overall objectives for Healthy People 2030, said Jeff Todd, president and CEO of Prevent Blindness. We look forward to working closely with the ODPHP and other partners in advancing education, awareness and access to care for millions of Americans.Healthy People 2030 is the fifth iteration of the Healthy People initiative, which sets 10-year national objectives to improve health and well-being nationwide. Healthy People 2030 Champions are public and private organizations that are working to help achieve Healthy People objectives. They receive official support and recognition from ODPHP.ODPHP is thrilled to recognize Prevent Blindness for its work to support the Healthy People 2030 vision, says RADM Paul Reed, MD, ODPHP director. Only by collaborating with partners nationwide can we achieve Healthy People 2030s overarching goals and objectives.For more information about Prevent Blindness and a variety of vision and eye health topics, please visit PreventBlindness.org. For more information on Healthy People 2030, please visit Health.gov/healthypeople.Healthy People 2030 Champion is a service mark of the U.S. Department of Health and Human Services. Used with permission. Participation by Prevent Blindness does not imply endorsement by HHS/ODPHP.

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Researchers make progress toward a stem cellbased therapy for blindness – Ophthalmology Times

August 11th, 2022 1:59 am

What if, in people with blinding retinal disorders, one could simply introduce into the retina healthy photoreceptor cells derived in a dish from stem cells, and restore sight?

According to a news release form the University of Pennsylvania, it is a straightforward strategy to curing blindness, yet the approach has been met with a number of scientific roadblocks, including introduced cells dying rapidly or failing to integrate with the retina.

A new study, published in Stem Cell Reports, overcomes these challenges and marks significant progress toward a cell-based therapy. The work, led by a team at the University of Pennsylvania School of Veterinary Medicine, in collaboration with researchers at the University of Wisconsin-Madison, Childrens Hospital of Philadelphia, and the National Institutes of Healths National Eye Institute (NEI), introduced precursors of human photoreceptor cells into the retinas of dogs. A cocktail of immunosuppressive drugs enabled the cells to survive in the recipients retinas for months, where they began forming connections with existing retinal cells.

In this study, we wanted to know if we could, one, improve the surgical delivery of these cells to the subretinal space; two, image the cells in vivo; three, improve their survival; and four, see them migrate to the layer of the retina where they should be and start integrating, said William Beltran, a professor of ophthalmology at Penn Vet and senior author on the study. The answer to all those questions was yes.

Beltran and Gustavo Aguirre at Penn Vet have long been interested in addressing retinal blinding disorders and they have had great successes to date at producing corrective gene therapies for conditions with known causative genes. But for many cases of inherited retinal degeneration, a gene has not been identified. In other patients, the disease has progressed so far that no photoreceptor cells remain intact enough for gene therapy. In either scenario, a regenerative medicine approach, in which photoreceptors could be regrown outright, would be extremely valuable.

To develop a cell therapy, Beltrans team joined with groups led by John Wolfe of CHOP and Penn Vet; David Gamm at the University of Wisconsin-Madison; and Kapil Bharti at the NEI, in a consortium supported by the NEIs Audacious Goals Initiative for Regenerative Medicine. The partnership combined Beltrans teams expertise in canine models of retinal degeneration and vast experience in cell-based therapy approaches from the Wolfe, Gamm, and Bharti labs.

According to the news release, photoreceptor cells, which are made up of rods and cones, constitute a layer of the outer retina critical to initiating the process of vision, whereby the energy of light transforms into an electrical signal. To function properly, they must form a connection, or synapse, with cells of the inner retina to pass along the visual information. Thus, the goal of this cell therapy is to recreate this layer and enable it to integrate with the retinas other cell types in order to relay signals from one layer to the next.

In the current work, the team used stem cellderived precursors of human photoreceptor cells developed in the Gamm lab to serve as the basis of the cell therapy. In collaboration with the Bharti lab, they developed a new surgical approach to inject the cells, which were labeled with fluorescent markers, into the retinas of seven dogs with normal vision and three with a form of inherited retinal degeneration, then used a variety of non-invasive imaging techniques to track the cells over time.

The use of a large animal model that undergoes a naturally occurring form of retinal degeneration and has a human-size eye was instrumental to optimize a safe and efficient surgical procedure to deliver doses of cells that could be used in patients, Gamm said in the news release.

The researchers observed that cell uptake was significantly better in the animals with retinal degeneration compared to those with normal retinas.

What we showed was that, if you inject the cells into a normal retina that has its own photoreceptor cells, the retina is pretty much intact and serves as a physical barrier, so the introduced cells dont connect with the second-order neurons in the retina, the bipolar cells, Beltran noted in the news release. But in three dogs that were at an advanced stage of retinal degeneration, the retinal barrier was more permeable. In that environment, cells had a better ability to start moving into the correct layer of the retina.

Because the transplanted human cells could be interpreted by the dogs immune system as foreign entities, the researchers did what would be done in other tissue transplant procedures: They gave the dogs immunosuppressive drugs. The trio of medications had been tested previously by Oliver Garden, a veterinary immunologist with Penn Vet at the time of the study, who is now dean of Louisiana State University School of Veterinary Medicine.

Indeed, while the injected cell populations declined substantially in dogs that did not receive the immune-suppressing drugs, the cell numbers dipped but then sustained in the dogs that received the cocktail.

The university noted that further characterization of the introduced cells revealed evidence of potential synapses.

We saw that yes, some are appearing to shake hands with those second-order neurons, Beltran added in the release. There appeared to be contact.

The next stage for this project will be to continue optimizing the therapy, and then test whether there is a functional responsein other words, improved visionin its recipients.

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UND professor carries the torch for UND studies of visual impairment and blindness – Grand Forks Herald

August 11th, 2022 1:59 am

GRAND FORKS Assistant Professor Renae Bjorg is carrying on a UND legacy in the field of visual impairments and blindness.

With her new book Guidelines and Games for Teaching Efficient Braille Reading (Second Edition), she continues the work of a longtime UND professor and her former mentor, Myrna Olson.

The first edition of Guidelines and Games'' was published in 1981, and was written in part by Olson, a UND professor of almost 50 years, and Sally Mangold, professor at San Francisco State. Since it was published 40 years ago, the book has remained one of the most popular resources for teachers learning how to teach students braille.

Bjorg said she was approached by American Printing House Press to write the book for the 40th anniversary of the first edition.

The updated edition, says Bjorg, includes new information about technological advances from the last 40 years, as well as updated terminology and research. The new edition also has more of a focus on bridging the gap between students who can see and students who are visually impaired or blind when learning to read.

Were still teaching reading and writing, said Bjorg. Its still English language arts, its just a different modality now Braille instead of print, but its still the same.

And like learning to read can be made fun for seeing students, learning to read can be fun for visually impaired or blind students as well. Board games and word games can be used to teach seeing students to read and write, so the book outlines similar games for those that cannot see.

When we can learn to make it fun and incorporate ergonomics and posture, then students, children and teachers can enjoy the process and enjoy the full learning and apply it in a natural way, said Bjorg.

Many of Bjorgs collaborators for Guidelines and Games were her advisees at UND that have gone on to work in the field of education and visual impairment and blindness, like Sara Careless, Sandra Kenrick, Danielle Moelter-Swangstue and Amy Neils.

We all have strengths and abilities, and part of my job as an adviser and a professor is to look at my students and pull these things out of them, she said. These students that I invited are beautiful writers and researchers, and highly qualified teachers in our field.

Others, like Laura Roy, coordinator of the Blind and Visually Impaired Services Unit in Manitoba; Dave Beckett, consultant for the blind and visually impaired in Manitoba, and Brittany Hagan, associate professor at Mayville State University have been impacted by Olson and wanted to give back to her.

Austin Winger, one of Olsons sons, also helped with the book.

Bjorg recently signed books at the Association for Education and Rehabilitation of the Blind and Visually Impaired International Conference in St. Louis, and has been invited to present at the North Dakota State Deafblind Conference and a conference in Nebraska hosted by the Nebraska Center for the Education of Children who are Blind or Visually Impaired.

At the book signing in St. Louis, Bjorg was surprised by the number of people lined up to get a copy of her book signed. At the conference, more than 200 copies were sold.

It was really encouraging, she said. People were so excited to get this book and when I was signing books, people didnt know Myrna Olson because some of the people are new in the field.

Read more from the original source:
UND professor carries the torch for UND studies of visual impairment and blindness - Grand Forks Herald

Read More...

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